interface explicitness

Author: ChrisRackauckas

src/maketype.jl

@@ -16,13 +16,13 @@ function maketype(name,
                   reactions=Vector{ReactionStruct}()
                   )
 
-    typeex = :(mutable struct $name <: AbstractReactionNetwork
+    typeex = :(mutable struct $name <: DiffEqBase.AbstractReactionNetwork
         f::Function
         f_func::Vector{Expr}
         f_symfuncs::Matrix{SymEngine.Basic}
         g::Function
         g_func::Vector{Any}
-        jumps::Tuple{AbstractJump,Vararg{AbstractJump}}
+        jumps::Tuple{DiffEqJump.AbstractJump,Vararg{DiffEqJump.AbstractJump}}
         regular_jumps::RegularJump
         jump_rate_expr::Tuple{Any,Vararg{Any}}
         jump_affect_expr::Tuple{Vector{Expr},Vararg{Vector{Expr}}}

src/problem.jl

@@ -1,9 +1,9 @@
 ### SDEProblem ###
-DiffEqBase.SDEProblem(rn::AbstractReactionNetwork, u0::Union{AbstractArray, Number}, args...; kwargs...) =
+DiffEqBase.SDEProblem(rn::DiffEqBase.AbstractReactionNetwork, u0::Union{AbstractArray, Number}, args...; kwargs...) =
     SDEProblem(rn, rn.g, u0, args...;noise_rate_prototype=rn.p_matrix, kwargs...)
 
 ### JumpProblem ###
-function DiffEqJump.JumpProblem(prob,aggregator,rn::AbstractReactionNetwork; kwargs...)
+function DiffEqJump.JumpProblem(prob,aggregator,rn::DiffEqBase.AbstractReactionNetwork; kwargs...)
     if typeof(prob)<:DiscreteProblem && any(issubtype.(typeof.(rn.jumps),VariableRateJump))
         error("When using time dependant reaction rates a DiscreteProblem should not be used (try an ODEProblem). Also, use a continious solver.")
     end
@@ -28,9 +28,9 @@ function DiffEqJump.JumpProblem(prob,aggregator,rn::AbstractReactionNetwork; kwa
 end
 
 ### SteadyStateProblem ###
-DiffEqBase.SteadyStateProblem(rn::AbstractReactionNetwork, args...; kwargs...) =
+DiffEqBase.SteadyStateProblem(rn::DiffEqBase.AbstractReactionNetwork, args...; kwargs...) =
     SteadyStateProblem(rn.f, args...; kwargs...)
 
-function DiffEqBase.SteadyStateProblem{isinplace}(rn::AbstractReactionNetwork, args...; kwargs...) where isinplace
+function DiffEqBase.SteadyStateProblem{isinplace}(rn::DiffEqBase.AbstractReactionNetwork, args...; kwargs...) where isinplace
     SteadyStateProblem{isinplace}(rn.f, args...; kwargs...)
 end