Explicit dev interface

v2.3.2

interface explicitness

Patch line numbers out for v0.7

v2.3.1

Update reaction_network.jl

Dependency graphs

Merge pull request #50 from isaacsas/dep-graph

WIP: generate dependency graph for reaction networks

Tons of changes

Merge pull request #49 from isaacsas/massaction-jumpproblems

Added conversions of jumps to MassActionJumps in JumpProblem

Fix save_positions usage

v2.1.0

pass on kwargs for JumpProblem

New Reaction DSL

v2.0.0

fix architecture-specific Ints

Syntax change

v1.0.0

Update REQUIRE

Higher order reactions and `@reaction_network`

Merge pull request #7 from weilandtd/patch-1

Higher order reactions

QoL updates

Merge pull request #4 from ScottPJones/spj/fixv06

Fix deprecation warning on Julia v0.6 and later

Initial Release

This package is for developing differential/difference/discrete stochastic models which are common in systems biological applications. Currently, the Reaction interface only allows you to define discrete Poisson-rate events. In the near future this will be expanded to allow users to have it build SDE/ODE equations as well.