From 02b98c207515a4cf102ac441e86d5180956364d2 Mon Sep 17 00:00:00 2001 From: Christopher Rackauckas Date: Fri, 13 Jun 2025 12:15:39 +0000 Subject: [PATCH 1/4] Bump autodiff tests --- .../AutomaticDifferentiation/Manifest.toml | 2063 ++++++++++------- .../AutomaticDifferentiation/Project.toml | 2 +- 2 files changed, 1225 insertions(+), 840 deletions(-) diff --git a/benchmarks/AutomaticDifferentiation/Manifest.toml b/benchmarks/AutomaticDifferentiation/Manifest.toml index e860f2e2e..80baa5cb0 100644 --- a/benchmarks/AutomaticDifferentiation/Manifest.toml +++ b/benchmarks/AutomaticDifferentiation/Manifest.toml @@ -1,17 +1,18 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.4" +julia_version = "1.10.9" manifest_format = "2.0" -project_hash = "f627a20b4963534c55406805656db6a033992142" +project_hash = "2f8589a6d69c1295560560ec337d9570e195b2ce" [[deps.ADTypes]] -git-tree-sha1 = "aa4d425271a914d8c4af6ad9fccb6eb3aec662c7" +git-tree-sha1 = "e2478490447631aedba0823d4d7a80b2cc8cdb32" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.6.1" -weakdeps = ["ChainRulesCore", "EnzymeCore"] +version = "1.14.0" +weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" ADTypesEnzymeCoreExt = "EnzymeCore" [[deps.AbstractFFTs]] @@ -31,34 +32,38 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.5" [[deps.Accessors]] -deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Test"] -git-tree-sha1 = "f61b15be1d76846c0ce31d3fcfac5380ae53db6a" +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "3b86719127f50670efe356bc11073d84b4ed7a5d" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.37" +version = "0.1.42" [deps.Accessors.extensions] - AccessorsAxisKeysExt = "AxisKeys" - AccessorsIntervalSetsExt = "IntervalSets" - AccessorsStaticArraysExt = "StaticArrays" - AccessorsStructArraysExt = "StructArrays" - AccessorsUnitfulExt = "Unitful" + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" [deps.Accessors.weakdeps] AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" - Requires = "ae029012-a4dd-5104-9daa-d747884805df" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +git-tree-sha1 = "f7817e2e585aa6d924fd714df1e2a84be7896c60" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.0.4" -weakdeps = ["StaticArrays"] +version = "4.3.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AliasTables]] @@ -67,6 +72,12 @@ git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" version = "1.1.3" +[[deps.AllocCheck]] +deps = ["ExprTools", "GPUCompiler", "LLVM", "MacroTools"] +git-tree-sha1 = "7e53c22135cd9a3d91e6c56e2e962106dc3d57f2" +uuid = "9b6a8646-10ed-4001-bbdc-1d2f46dfbb1a" +version = "0.2.2" + [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" version = "1.1.1" @@ -78,19 +89,21 @@ uuid = "ec485272-7323-5ecc-a04f-4719b315124d" version = "0.4.0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "5c9b74c973181571deb6442d41e5c902e6b9f38e" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "9606d7832795cbef89e06a550475be300364a8aa" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.12.0" +version = "7.19.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -100,16 +113,18 @@ version = "7.12.0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "ce2ca959f932f5dad70697dd93133d1167cf1e4e" +git-tree-sha1 = "4e25216b8fea1908a0ce0f5d87368587899f75be" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.10.2" +version = "1.11.1" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -120,23 +135,35 @@ uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" [[deps.Atomix]] deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +git-tree-sha1 = "b5bb4dc6248fde467be2a863eb8452993e74d402" uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.1.1" + + [deps.Atomix.extensions] + AtomixCUDAExt = "CUDA" + AtomixMetalExt = "Metal" + AtomixOpenCLExt = "OpenCL" + AtomixoneAPIExt = "oneAPI" + + [deps.Atomix.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + OpenCL = "08131aa3-fb12-5dee-8b74-c09406e224a2" + oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" [[deps.BenchmarkTools]] -deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "f1dff6729bc61f4d49e140da1af55dcd1ac97b2f" +deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "e38fbc49a620f5d0b660d7f543db1009fe0f8336" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.5.0" +version = "1.6.0" [[deps.Bijections]] -git-tree-sha1 = "95f5c7e2d177b7ba1a240b0518038b975d72a8c0" +git-tree-sha1 = "a2d308fcd4c2fb90e943cf9cd2fbfa9c32b69733" uuid = "e2ed5e7c-b2de-5872-ae92-c73ca462fb04" -version = "0.1.7" +version = "0.2.2" [[deps.BitFlags]] git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" @@ -149,11 +176,36 @@ git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" version = "0.1.6" +[[deps.BlockArrays]] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] +git-tree-sha1 = "a8c0f363186263d75e97a41878d10dd842797561" +uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" +version = "1.6.3" + + [deps.BlockArrays.extensions] + BlockArraysAdaptExt = "Adapt" + BlockArraysBandedMatricesExt = "BandedMatrices" + + [deps.BlockArrays.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + +[[deps.BracketingNonlinearSolve]] +deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "a9014924595b7a2c1dd14aac516e38fa10ada656" +uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" +version = "1.3.0" +weakdeps = ["ChainRulesCore", "ForwardDiff"] + + [deps.BracketingNonlinearSolve.extensions] + BracketingNonlinearSolveChainRulesCoreExt = ["ChainRulesCore", "ForwardDiff"] + BracketingNonlinearSolveForwardDiffExt = "ForwardDiff" + [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+1" +version = "1.0.9+0" [[deps.CEnum]] git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" @@ -166,28 +218,16 @@ git-tree-sha1 = "5a97e67919535d6841172016c9530fd69494e5ec" uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" version = "0.2.6" -[[deps.CSTParser]] -deps = ["Tokenize"] -git-tree-sha1 = "0157e592151e39fa570645e2b2debcdfb8a0f112" -uuid = "00ebfdb7-1f24-5e51-bd34-a7502290713f" -version = "3.4.3" - [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" +git-tree-sha1 = "fde3bf89aead2e723284a8ff9cdf5b551ed700e8" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.0+2" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+0" [[deps.Cassette]] -git-tree-sha1 = "0970356c3bb9113309c74c27c87083cf9c73880a" +git-tree-sha1 = "f8764df8d9d2aec2812f009a1ac39e46c33354b8" uuid = "7057c7e9-c182-5462-911a-8362d720325c" -version = "0.3.13" +version = "0.3.14" [[deps.Chain]] git-tree-sha1 = "9ae9be75ad8ad9d26395bf625dea9beac6d519f1" @@ -196,25 +236,25 @@ version = "0.6.0" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "227985d885b4dbce5e18a96f9326ea1e836e5a03" +git-tree-sha1 = "204e9b212da5cc7df632b58af8d49763383f47fa" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.69.0" +version = "1.72.4" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "71acdbf594aab5bbb2cec89b208c41b4c411e49f" +git-tree-sha1 = "1713c74e00545bfe14605d2a2be1712de8fbcb58" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.24.0" +version = "1.25.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.Chairmarks]] -deps = ["Printf"] -git-tree-sha1 = "989bd3bb757ac0231fc77103e1b516e05c7d21f1" +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" -version = "1.2.1" +version = "1.3.1" weakdeps = ["Statistics"] [deps.Chairmarks.extensions] @@ -228,33 +268,39 @@ version = "0.1.13" [[deps.CodeTracking]] deps = ["InteractiveUtils", "UUIDs"] -git-tree-sha1 = "c0216e792f518b39b22212127d4a84dc31e4e386" +git-tree-sha1 = "062c5e1a5bf6ada13db96a4ae4749a4c2234f521" uuid = "da1fd8a2-8d9e-5ec2-8556-3022fb5608a2" -version = "1.3.5" +version = "1.3.9" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "b8fe8546d52ca154ac556809e10c75e6e7430ac8" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.5" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "b5278586822443594ff615963b0c09755771b3e0" +git-tree-sha1 = "403f2d8e209681fcbd9468a8514efff3ea08452e" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.26.0" +version = "3.29.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.5" +version = "0.12.1" + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" + + [deps.ColorTypes.weakdeps] + StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -262,20 +308,20 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.11" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "8010b6bb3388abe68d95743dcbea77650bb2eddf" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.0.3" [[deps.CommonMark]] -deps = ["Crayons", "JSON", "PrecompileTools", "URIs"] -git-tree-sha1 = "532c4185d3c9037c0237546d817858b23cf9e071" +deps = ["PrecompileTools"] +git-tree-sha1 = "351d6f4eaf273b753001b2de4dffb8279b100769" uuid = "a80b9123-70ca-4bc0-993e-6e3bcb318db6" -version = "0.8.12" +version = "0.9.1" [[deps.CommonSolve]] git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" @@ -283,10 +329,10 @@ uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" version = "0.2.4" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.CommonWorldInvalidations]] git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" @@ -295,9 +341,9 @@ version = "1.0.0" [[deps.Compat]] deps = ["TOML", "UUIDs"] -git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.15.0" +version = "4.16.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -308,25 +354,6 @@ deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" version = "1.1.1+0" -[[deps.ComponentArrays]] -deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "Functors", "LinearAlgebra", "PackageExtensionCompat", "StaticArrayInterface", "StaticArraysCore"] -git-tree-sha1 = "c2663c30580894680c793d6b8043567b5f4d4878" -uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" -version = "0.15.14" -weakdeps = ["Adapt", "ConstructionBase", "GPUArrays", "Optimisers", "RecursiveArrayTools", "ReverseDiff", "SciMLBase", "Tracker", "TruncatedStacktraces", "Zygote"] - - [deps.ComponentArrays.extensions] - ComponentArraysAdaptExt = "Adapt" - ComponentArraysConstructionBaseExt = "ConstructionBase" - ComponentArraysGPUArraysExt = "GPUArrays" - ComponentArraysOptimisersExt = "Optimisers" - ComponentArraysRecursiveArrayToolsExt = "RecursiveArrayTools" - ComponentArraysReverseDiffExt = "ReverseDiff" - ComponentArraysSciMLBaseExt = "SciMLBase" - ComponentArraysTrackerExt = "Tracker" - ComponentArraysTruncatedStacktracesExt = "TruncatedStacktraces" - ComponentArraysZygoteExt = "Zygote" - [[deps.CompositeTypes]] git-tree-sha1 = "bce26c3dab336582805503bed209faab1c279768" uuid = "b152e2b5-7a66-4b01-a709-34e65c35f657" @@ -348,9 +375,9 @@ version = "0.2.3" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "ea32b83ca4fefa1768dc84e504cc0a94fb1ab8d1" +git-tree-sha1 = "d9d26935a0bcffc87d2613ce14c527c99fc543fd" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.4.2" +version = "2.5.0" [[deps.Conda]] deps = ["Downloads", "JSON", "VersionParsing"] @@ -359,14 +386,14 @@ uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d" version = "1.10.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d8a9c0b6ac2d9081bf76324b39c78ca3ce4f0c98" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.6" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] @@ -391,22 +418,22 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.16.0" [[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "fb61b4812c49343d7ef0b533ba982c46021938a6" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" +version = "1.7.0" [[deps.DataFramesMeta]] deps = ["Chain", "DataFrames", "MacroTools", "OrderedCollections", "Reexport", "TableMetadataTools"] -git-tree-sha1 = "7042a6ad5910dc9edeae814e1110209752a1c996" +git-tree-sha1 = "21a4335f249f8b5f311d00d5e62938b50ccace4e" uuid = "1313f7d8-7da2-5740-9ea0-a2ca25f37964" -version = "0.15.3" +version = "0.15.4" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +git-tree-sha1 = "4e1fe97fdaed23e9dc21d4d664bea76b65fc50a0" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.20" +version = "0.18.22" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -417,6 +444,12 @@ version = "1.0.0" deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" + [[deps.DelimitedFiles]] deps = ["Mmap"] git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" @@ -424,21 +457,25 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "d1e8a4642e28b0945bde6e2e1ac569b9e0abd728" +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "2d87d7bd165c1ca0d11923a9fabe90a9d71e88a6" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.151.5" +version = "6.176.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" DiffEqBaseDistributionsExt = "Distributions" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] + DiffEqBaseForwardDiffExt = ["ForwardDiff"] + DiffEqBaseGTPSAExt = "GTPSA" DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" DiffEqBaseMPIExt = "MPI" DiffEqBaseMeasurementsExt = "Measurements" DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" + DiffEqBaseMooncakeExt = "Mooncake" DiffEqBaseReverseDiffExt = "ReverseDiff" + DiffEqBaseSparseArraysExt = "SparseArrays" DiffEqBaseTrackerExt = "Tracker" DiffEqBaseUnitfulExt = "Unitful" @@ -447,29 +484,29 @@ version = "6.151.5" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.DiffEqCallbacks]] -deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "c959cfd2657d16beada157a74d52269e8556500e" +deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "Functors", "LinearAlgebra", "Markdown", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "76292e889472e810d40a844b714743c0ffb1c53b" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "3.6.2" - - [deps.DiffEqCallbacks.weakdeps] - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" +version = "4.6.0" [[deps.DiffEqNoiseProcess]] -deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "ed0158e758723b4d429afbbb5d98c5afd3458dc1" +deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] +git-tree-sha1 = "516d553f5deee7c55b2945b5edf05b6542837887" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.22.0" +version = "5.24.1" weakdeps = ["ReverseDiff"] [deps.DiffEqNoiseProcess.extensions] @@ -494,57 +531,90 @@ uuid = "de460e47-3fe3-5279-bb4a-814414816d5d" version = "0.1.2" [[deps.DifferentiationInterface]] -deps = ["ADTypes", "Compat", "DocStringExtensions", "FillArrays", "LinearAlgebra", "PackageExtensionCompat", "SparseArrays", "SparseMatrixColorings"] -git-tree-sha1 = "c81579b549a00edf31582d318fec06523e0b607a" +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "c8d85ecfcbaef899308706bebdd8b00107f3fb43" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.5.9" +version = "0.6.54" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" DifferentiationInterfaceDiffractorExt = "Diffractor" - DifferentiationInterfaceEnzymeExt = "Enzyme" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" - DifferentiationInterfaceForwardDiffExt = "ForwardDiff" - DifferentiationInterfacePolyesterForwardDiffExt = "PolyesterForwardDiff" - DifferentiationInterfaceReverseDiffExt = "ReverseDiff" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" DifferentiationInterfaceSymbolicsExt = "Symbolics" - DifferentiationInterfaceTapirExt = "Tapir" DifferentiationInterfaceTrackerExt = "Tracker" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Tapir = "07d77754-e150-4737-8c94-cd238a1fb45b" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.DifferentiationInterfaceTest]] -deps = ["ADTypes", "Chairmarks", "Compat", "ComponentArrays", "DataFrames", "DifferentiationInterface", "DocStringExtensions", "JET", "JLArrays", "LinearAlgebra", "ProgressMeter", "Random", "SparseArrays", "StaticArrays", "Test"] -git-tree-sha1 = "6f1c6fe3011202ac5f1645edce4d3d5efe8c34d0" +deps = ["ADTypes", "AllocCheck", "Chairmarks", "DataFrames", "DifferentiationInterface", "DocStringExtensions", "JET", "LinearAlgebra", "ProgressMeter", "Random", "SparseArrays", "Statistics", "Test"] +git-tree-sha1 = "47745d14ed38d87688435f942ee058c8e262c12c" uuid = "a82114a7-5aa3-49a8-9643-716bb13727a3" -version = "0.5.0" +version = "0.10.0" -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.11" -weakdeps = ["ChainRulesCore", "SparseArrays"] + [deps.DifferentiationInterfaceTest.extensions] + DifferentiationInterfaceTestComponentArraysExt = "ComponentArrays" + DifferentiationInterfaceTestFluxExt = ["FiniteDifferences", "Flux", "Functors"] + DifferentiationInterfaceTestJLArraysExt = "JLArrays" + DifferentiationInterfaceTestLuxExt = ["ComponentArrays", "ForwardDiff", "Lux", "LuxTestUtils"] + DifferentiationInterfaceTestStaticArraysExt = "StaticArrays" - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" + [deps.DifferentiationInterfaceTest.weakdeps] + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Functors = "d9f16b24-f501-4c13-a1f2-28368ffc5196" + JLArrays = "27aeb0d3-9eb9-45fb-866b-73c2ecf80fcb" + Lux = "b2108857-7c20-44ae-9111-449ecde12c47" + LuxTestUtils = "ac9de150-d08f-4546-94fb-7472b5760531" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.DispatchDoctor]] +deps = ["MacroTools", "Preferences"] +git-tree-sha1 = "f311fe66bfe4e38b2f1c8d1081f06920092b57aa" +uuid = "8d63f2c5-f18a-4cf2-ba9d-b3f60fc568c8" +version = "0.4.19" +weakdeps = ["ChainRulesCore", "EnzymeCore"] + + [deps.DispatchDoctor.extensions] + DispatchDoctorChainRulesCoreExt = "ChainRulesCore" + DispatchDoctorEnzymeCoreExt = "EnzymeCore" [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -552,9 +622,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "9c405847cc7ecda2dc921ccf18b47ca150d7317e" +git-tree-sha1 = "3e6d038b77f22791b8e3472b7c633acea1ecac06" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.109" +version = "0.25.120" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -567,16 +637,15 @@ version = "0.25.109" Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.9.5" [[deps.DomainSets]] deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "Random", "StaticArrays"] -git-tree-sha1 = "490392af2c7d63183bfa2c8aaa6ab981c5ba7561" +git-tree-sha1 = "a7e9f13f33652c533d49868a534bfb2050d1365f" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.14" +version = "0.7.15" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" @@ -589,23 +658,17 @@ deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - [[deps.DynamicPolynomials]] -deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Pkg", "Reexport", "Test"] -git-tree-sha1 = "30a1848c4f4fc35d1d4bbbd125650f6a11b5bc6c" +deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "Test"] +git-tree-sha1 = "98c4bb95af37e5d980129261fdd6dab0392c6607" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.5.7" +version = "0.6.2" [[deps.DynamicQuantities]] -deps = ["Compat", "PackageExtensionCompat", "Tricks"] -git-tree-sha1 = "412b25c7d99ec6b06967d315c7b29bb8e484f092" +deps = ["DispatchDoctor", "PrecompileTools", "TestItems", "Tricks"] +git-tree-sha1 = "44ec2bcde862031866a9f43ee477eaa1ddb0cccc" uuid = "06fc5a27-2a28-4c7c-a15d-362465fb6821" -version = "0.13.2" +version = "1.8.0" [deps.DynamicQuantities.extensions] DynamicQuantitiesLinearAlgebraExt = "LinearAlgebra" @@ -619,34 +682,37 @@ version = "0.13.2" ScientificTypes = "321657f4-b219-11e9-178b-2701a2544e81" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" -[[deps.EllipsisNotation]] -deps = ["StaticArrayInterface"] -git-tree-sha1 = "3507300d4343e8e4ad080ad24e335274c2e297a9" -uuid = "da5c29d0-fa7d-589e-88eb-ea29b0a81949" -version = "1.8.0" - [[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +git-tree-sha1 = "bddad79635af6aec424f53ed8aad5d7555dc6f00" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" +version = "1.0.5" [[deps.Enzyme]] -deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "Preferences", "Printf", "Random"] -git-tree-sha1 = "82b645b728e13c4e5a712a2f4734c8f567b0a9ef" +deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "InteractiveUtils", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "PrecompileTools", "Preferences", "Printf", "Random", "SparseArrays"] +git-tree-sha1 = "ef9aa10938d97cd42c524482eda5c523ec4bf0d5" uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" -version = "0.12.25" -weakdeps = ["ChainRulesCore", "LogExpFunctions", "SpecialFunctions", "StaticArrays"] +version = "0.13.49" [deps.Enzyme.extensions] + EnzymeBFloat16sExt = "BFloat16s" EnzymeChainRulesCoreExt = "ChainRulesCore" + EnzymeGPUArraysCoreExt = "GPUArraysCore" EnzymeLogExpFunctionsExt = "LogExpFunctions" EnzymeSpecialFunctionsExt = "SpecialFunctions" EnzymeStaticArraysExt = "StaticArrays" + [deps.Enzyme.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688" + SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + [[deps.EnzymeCore]] -git-tree-sha1 = "d445df66dd8761a4c27df950db89c6a3a0629fe7" +git-tree-sha1 = "7d7822a643c33bbff4eab9c87ca8459d7c688db0" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.7.7" +version = "0.8.11" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] @@ -654,44 +720,53 @@ weakdeps = ["Adapt"] [[deps.Enzyme_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e21a4874d5dd7ce77e4eefd4e2653f56a7afe7c1" +git-tree-sha1 = "168b7e5924b1fdb14bb246e7263438bb26d040c5" uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" -version = "0.0.137+0" +version = "0.0.181+0" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" +git-tree-sha1 = "8a4be429317c42cfae6a7fc03c31bad1970c310d" uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" +version = "0.0.20230411+1" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +git-tree-sha1 = "d36f682e590a83d63d1c7dbd287573764682d12a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.10" +version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +git-tree-sha1 = "d55dffd9ae73ff72f1c0482454dcf2ec6c6c4a63" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.6.2+0" +version = "2.6.5+0" [[deps.ExponentialUtilities]] deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] -git-tree-sha1 = "8e18940a5ba7f4ddb41fe2b79b6acaac50880a86" +git-tree-sha1 = "cae251c76f353e32d32d76fae2fea655eab652af" uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" -version = "1.26.1" +version = "1.27.0" +weakdeps = ["StaticArrays"] + + [deps.ExponentialUtilities.extensions] + ExponentialUtilitiesStaticArraysExt = "StaticArrays" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" +[[deps.ExproniconLite]] +git-tree-sha1 = "c13f0b150373771b0fdc1713c97860f8df12e6c2" +uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" +version = "0.10.14" + [[deps.FFMPEG]] deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +git-tree-sha1 = "53ebe7511fa11d33bec688a9178fac4e49eeee00" uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" +version = "0.4.2" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] @@ -701,29 +776,50 @@ version = "4.4.4+1" [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "bd19de6fe8a3b18888f35e79832f97544684caa7" +git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.4" +version = "0.3.5" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" -[[deps.FastLapackInterface]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "cbf5edddb61a43669710cbc2241bc08b36d9e660" -uuid = "29a986be-02c6-4525-aec4-84b980013641" -version = "2.0.4" +[[deps.FastGaussQuadrature]] +deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] +git-tree-sha1 = "fd923962364b645f3719855c88f7074413a6ad92" +uuid = "442a2c76-b920-505d-bb47-c5924d526838" +version = "1.0.2" + +[[deps.FastPower]] +git-tree-sha1 = "df32f07f373f06260cd6af5371385b5ef85dd762" +uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b" +version = "1.1.2" + + [deps.FastPower.extensions] + FastPowerEnzymeExt = "Enzyme" + FastPowerForwardDiffExt = "ForwardDiff" + FastPowerMeasurementsExt = "Measurements" + FastPowerMonteCarloMeasurementsExt = "MonteCarloMeasurements" + FastPowerReverseDiffExt = "ReverseDiff" + FastPowerTrackerExt = "Tracker" + + [deps.FastPower.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra"] -git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +git-tree-sha1 = "6a70198746448456524cb442b8af316927ff3e1a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.11.0" +version = "1.13.0" weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -732,24 +828,26 @@ weakdeps = ["PDMats", "SparseArrays", "Statistics"] FillArraysStatisticsExt = "Statistics" [[deps.FindFirstFunctions]] -git-tree-sha1 = "e90fef90f7d75e6a5b435b0fd65609759f99717a" +git-tree-sha1 = "670e1d9ceaa4a3161d32fe2d2fb2177f8d78b330" uuid = "64ca27bc-2ba2-4a57-88aa-44e436879224" -version = "1.2.0" +version = "1.4.1" [[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "2de436b72c3422940cbe1367611d137008af7ec3" +deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] +git-tree-sha1 = "f089ab1f834470c525562030c8cfde4025d5e915" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.23.1" +version = "2.27.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" + FiniteDiffSparseArraysExt = "SparseArrays" FiniteDiffStaticArraysExt = "StaticArrays" [deps.FiniteDiff.weakdeps] BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.FixedPointNumbers]] @@ -760,9 +858,9 @@ version = "0.8.5" [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] -git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +git-tree-sha1 = "301b5d5d731a0654825f1f2e906990f7141a106b" uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.96+0" +version = "2.16.0+0" [[deps.Format]] git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" @@ -771,9 +869,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +git-tree-sha1 = "a2df1b776752e3f344e5116c06d75a10436ab853" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" +version = "0.10.38" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -781,15 +879,15 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" +git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.2+0" +version = "2.13.4+0" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.14+0" +version = "1.0.17+0" [[deps.FunctionProperties]] deps = ["Cassette", "DiffRules"] @@ -809,56 +907,50 @@ uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" version = "0.1.3" [[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "8a66c07630d6428eaab3506a0eabfcf4a9edea05" +deps = ["Compat", "ConstructionBase", "LinearAlgebra", "Random"] +git-tree-sha1 = "60a0339f28a233601cb74468032b5c302d5067de" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.11" +version = "0.5.2" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "3f74912a156096bd8fdbef211eff66ab446e7297" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] +git-tree-sha1 = "fcb0584ff34e25155876418979d4c8971243bb89" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.0+0" - -[[deps.GPUArrays]] -deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "a74c3f1cf56a3dfcdef0605f8cdb7015926aae30" -uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "10.3.0" +version = "3.4.0+2" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +git-tree-sha1 = "83cf05ab16a73219e5f6bd1bdfa9848fa24ac627" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.6" +version = "0.2.0" [[deps.GPUCompiler]] -deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Preferences", "Scratch", "Serialization", "TOML", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "ab29216184312f99ff957b32cd63c2fe9c928b91" +deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "PrecompileTools", "Preferences", "Scratch", "Serialization", "TOML", "Tracy", "UUIDs"] +git-tree-sha1 = "38e96dd44b8b1db92c81c6eb11ac39d207aa83d5" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.26.7" +version = "1.5.2" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] -git-tree-sha1 = "629693584cef594c3f6f99e76e7a7ad17e60e8d5" +git-tree-sha1 = "4424dca1462cc3f19a0e6f07b809ad948ac1d62b" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.7" +version = "0.73.16" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a8863b69c2a0859f2c2c87ebdc4c6712e88bdf0d" +git-tree-sha1 = "d7ecfaca1ad1886de4f9053b5b8aef34f36ede7f" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.7+0" +version = "0.73.16+0" [[deps.GenericSchur]] deps = ["LinearAlgebra", "Printf"] -git-tree-sha1 = "af49a0851f8113fcfae2ef5027c6d49d0acec39b" +git-tree-sha1 = "f88e0ba1f6b42121a7c1dfe93a9687d8e164c91b" uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" -version = "0.5.4" +version = "0.5.5" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -867,22 +959,22 @@ uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" version = "0.21.0+0" [[deps.Git]] -deps = ["Git_jll"] -git-tree-sha1 = "04eff47b1354d702c3a85e8ab23d539bb7d5957e" +deps = ["Git_jll", "JLLWrappers", "OpenSSH_jll"] +git-tree-sha1 = "2230a9cc32394b11a3b3aa807a382e3bbab1198c" uuid = "d7ba0133-e1db-5d97-8f8c-041e4b3a1eb2" -version = "1.3.1" +version = "1.4.0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "d18fb8a1f3609361ebda9bf029b60fd0f120c809" +git-tree-sha1 = "2f6d6f7e6d6de361865d4394b802c02fc944fc7c" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.44.0+2" +version = "2.49.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" +git-tree-sha1 = "fee60557e4f19d0fe5cd169211fdda80e494f4e8" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.80.2+0" +version = "2.84.0+0" [[deps.Glob]] git-tree-sha1 = "97285bbd5230dd766e9ef6749b80fc617126d496" @@ -890,16 +982,16 @@ uuid = "c27321d9-0574-5035-807b-f59d2c89b15c" version = "1.3.1" [[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8a6dbda1fd736d60cc477d99f2e7a042acfa46e8" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" +version = "1.3.15+0" [[deps.Graphs]] -deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "ebd18c326fa6cee1efb7da9a3b45cf69da2ed4d9" +deps = ["ArnoldiMethod", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] +git-tree-sha1 = "c5abfa0ae0aaee162a3fbb053c13ecda39be545b" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.11.2" +version = "1.13.0" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -907,16 +999,21 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "f93655dc73d7a0b4a368e3c0bce296ae035ad76e" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.8" +version = "1.10.16" [[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] +git-tree-sha1 = "f923f9a774fcf3f5cb761bfa43aeadd689714813" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" +version = "8.5.1+0" + +[[deps.HashArrayMappedTries]] +git-tree-sha1 = "2eaa69a7cab70a52b9687c8bf950a5a93ec895ae" +uuid = "076d061b-32b6-4027-95e0-9a2c6f6d7e74" +version = "0.2.0" [[deps.Highlights]] deps = ["DocStringExtensions", "InteractiveUtils", "REPL"] @@ -924,23 +1021,17 @@ git-tree-sha1 = "9e13b8d8b1367d9692a90ea4711b4278e4755c32" uuid = "eafb193a-b7ab-5a9e-9068-77385905fa72" version = "0.5.3" -[[deps.HostCPUFeatures]] -deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] -git-tree-sha1 = "8e070b599339d622e9a081d17230d74a5c473293" -uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" -version = "0.1.17" - [[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "68c173f4f449de5b438ee67ed0c9c748dc31a2ec" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" +version = "0.3.28" [[deps.IJulia]] -deps = ["Base64", "Conda", "Dates", "InteractiveUtils", "JSON", "Libdl", "Logging", "Markdown", "MbedTLS", "Pkg", "Printf", "REPL", "Random", "SoftGlobalScope", "Test", "UUIDs", "ZMQ"] -git-tree-sha1 = "1702f79fa30f56b68d5b2fd6fb3a9a14ff6f9130" +deps = ["Base64", "Conda", "Dates", "InteractiveUtils", "JSON", "Logging", "Markdown", "MbedTLS", "Pkg", "Printf", "REPL", "Random", "SoftGlobalScope", "UUIDs", "ZMQ"] +git-tree-sha1 = "5bea4d841d5db750a1bb5ccdc37b2759dfa80066" uuid = "7073ff75-c697-5162-941a-fcdaad2a7d2a" -version = "1.25.0" +version = "1.28.1" [[deps.IRTools]] deps = ["InteractiveUtils", "MacroTools"] @@ -953,15 +1044,21 @@ git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" version = "0.1.1" +[[deps.ImplicitDiscreteSolve]] +deps = ["DiffEqBase", "OrdinaryDiffEqCore", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SymbolicIndexingInterface", "UnPack"] +git-tree-sha1 = "abb8f57a2768bc152d7acafefcdda01ee374cd11" +uuid = "3263718b-31ed-49cf-8a0f-35a466e8af96" +version = "0.1.2" + [[deps.Inflate]] git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" version = "0.1.5" [[deps.InlineStrings]] -git-tree-sha1 = "45521d31238e87ee9f9732561bfee12d4eebd52d" +git-tree-sha1 = "6a9fde685a7ac1eb3495f8e812c5a7c3711c2d5e" uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.2" +version = "1.4.3" [deps.InlineStrings.extensions] ArrowTypesExt = "ArrowTypes" @@ -971,20 +1068,25 @@ version = "1.4.2" ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" Parsers = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.2" + [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "14eb2b542e748570b56446f4c50fbfb2306ebc45" +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "0f14a5456bdc6b9731a5682f439a672750a09e48" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2024.2.0+0" +version = "2025.0.4+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.IntervalSets]] -git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +git-tree-sha1 = "5fbb102dcb8b1a858111ae81d56682376130517d" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.10" +version = "0.7.11" weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] @@ -993,24 +1095,24 @@ weakdeps = ["Random", "RecipesBase", "Statistics"] IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "18c59411ece4838b18cd7f537e56cf5e41ce5bfd" +git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.15" -weakdeps = ["Dates"] +version = "0.1.17" +weakdeps = ["Dates", "Test"] [deps.InverseFunctions.extensions] - DatesExt = "Dates" + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" [[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +git-tree-sha1 = "6da3c4316095de0f5ee2ebd875df8721e7e0bdbe" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" +version = "1.3.1" [[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +git-tree-sha1 = "e2222959fbc6c19554dc15174c81bf7bf3aa691c" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" +version = "0.2.4" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -1018,34 +1120,30 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JET]] -deps = ["CodeTracking", "InteractiveUtils", "JuliaInterpreter", "LoweredCodeUtils", "MacroTools", "Pkg", "PrecompileTools", "Preferences", "Test"] -git-tree-sha1 = "1f209ff8dce4cebff6bfebd2da9cdc0e982874a6" +deps = ["CodeTracking", "InteractiveUtils", "JuliaInterpreter", "JuliaSyntax", "LoweredCodeUtils", "MacroTools", "Pkg", "PrecompileTools", "Preferences", "Test"] +git-tree-sha1 = "a453c9b3320dd73f5b05e8882446b6051cb254c4" uuid = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" -version = "0.9.6" +version = "0.9.18" [deps.JET.extensions] - ReviseExt = "Revise" + JETCthulhuExt = "Cthulhu" + JETReviseExt = "Revise" [deps.JET.weakdeps] + Cthulhu = "f68482b8-f384-11e8-15f7-abe071a5a75f" Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" -[[deps.JLArrays]] -deps = ["Adapt", "GPUArrays", "Random"] -git-tree-sha1 = "75702bdeef420d93315d79aa7f30450beec32cbe" -uuid = "27aeb0d3-9eb9-45fb-866b-73c2ecf80fcb" -version = "0.1.5" - [[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" +deps = ["REPL", "Random", "fzf_jll"] +git-tree-sha1 = "82f7acdc599b65e0f8ccd270ffa1467c21cb647b" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.7" +version = "0.1.11" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +git-tree-sha1 = "a007feb38b422fbdab534406aeca1b86823cb4d6" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" +version = "1.7.0" [[deps.JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] @@ -1053,55 +1151,59 @@ git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.4" +[[deps.Jieko]] +deps = ["ExproniconLite"] +git-tree-sha1 = "2f05ed29618da60c06a87e9c033982d4f71d0b6c" +uuid = "ae98c720-c025-4a4a-838c-29b094483192" +version = "0.2.1" + [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +git-tree-sha1 = "eac1206917768cb54957c65a615460d87b455fc1" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.0.3+0" +version = "3.1.1+0" [[deps.JuliaFormatter]] -deps = ["CSTParser", "CommonMark", "DataStructures", "Glob", "Pkg", "PrecompileTools", "Tokenize"] -git-tree-sha1 = "0b50446cd3e52a51a7d48b52d49ec1a875aaf6e8" +deps = ["CommonMark", "Glob", "JuliaSyntax", "PrecompileTools", "TOML"] +git-tree-sha1 = "56b382cd34b1a80f63211a0b009461915915bf9e" uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899" -version = "1.0.58" +version = "2.1.2" [[deps.JuliaInterpreter]] deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"] -git-tree-sha1 = "a6adc2dcfe4187c40dc7c2c9d2128e326360e90a" +git-tree-sha1 = "c47892541d03e5dc63467f8964c9f2b415dfe718" uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a" -version = "0.9.32" +version = "0.9.46" + +[[deps.JuliaSyntax]] +git-tree-sha1 = "937da4713526b96ac9a178e2035019d3b78ead4a" +uuid = "70703baa-626e-46a2-a12c-08ffd08c73b4" +version = "0.4.10" [[deps.JumpProcesses]] -deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface", "UnPack"] -git-tree-sha1 = "ed08d89318be7d625613f3c435d1f6678fba4850" +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "StaticArrays", "SymbolicIndexingInterface", "UnPack"] +git-tree-sha1 = "fb7fd516de38db80f50fe15e57d44da2836365e7" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.11.1" +version = "9.16.0" weakdeps = ["FastBroadcast"] - [deps.JumpProcesses.extensions] - JumpProcessFastBroadcastExt = "FastBroadcast" - -[[deps.KLU]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] -git-tree-sha1 = "07649c499349dad9f08dde4243a4c597064663e9" -uuid = "ef3ab10e-7fda-4108-b977-705223b18434" -version = "0.6.0" - [[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "d0448cebd5919e06ca5edc7a264631790de810ec" +deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs"] +git-tree-sha1 = "602c0e9efadafb8abfe8281c3fbf9cf6f406fc03" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.22" -weakdeps = ["EnzymeCore"] +version = "0.9.35" +weakdeps = ["EnzymeCore", "LinearAlgebra", "SparseArrays"] [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" + LinearAlgebraExt = "LinearAlgebra" + SparseArraysExt = "SparseArrays" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "267dad6b4b7b5d529c76d40ff48d33f7e94cb834" +git-tree-sha1 = "b94257a1a8737099ca40bc7271a8b374033473ed" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.9.6" +version = "0.10.1" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1110,16 +1212,16 @@ uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" version = "3.100.2+0" [[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" +version = "4.0.1+0" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "020abd49586480c1be84f57da0017b5d3db73f7c" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Unicode"] +git-tree-sha1 = "5e8b243b2e4c86648dac82cf767ae1456000b92d" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "8.0.0" +version = "9.4.0" [deps.LLVM.extensions] BFloat16sExt = "BFloat16s" @@ -1129,51 +1231,44 @@ version = "8.0.0" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "c2636c264861edc6d305e6b4d528f09566d24c5e" +git-tree-sha1 = "f8022e2c8b5eef5f30e7fb2fe52c97cc5674db23" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.30+0" +version = "0.0.36+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.7+0" +version = "18.1.8+0" [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.2+0" +version = "2.10.3+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.1" - -[[deps.LabelledArrays]] -deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "LinearAlgebra", "MacroTools", "PreallocationTools", "RecursiveArrayTools", "StaticArrays"] -git-tree-sha1 = "e459fda6b68ea8684b3fcd513d2fd1e5130c4402" -uuid = "2ee39098-c373-598a-b85f-a56591580800" -version = "1.16.0" - -[[deps.LambertW]] -git-tree-sha1 = "c5ffc834de5d61d00d2b0e18c96267cffc21f648" -uuid = "984bce1d-4616-540c-a9ee-88d1112d94c9" -version = "0.4.6" +version = "1.4.0" [[deps.Latexify]] deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] -git-tree-sha1 = "5b0d630f3020b82c0775a51d05895852f8506f50" +git-tree-sha1 = "4f34eaabe49ecb3fb0d58d6015e32fd31a733199" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.4" +version = "0.16.8" [deps.Latexify.extensions] DataFramesExt = "DataFrames" + SparseArraysExt = "SparseArrays" SymEngineExt = "SymEngine" + TectonicExt = "tectonic_jll" [deps.Latexify.weakdeps] DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] @@ -1183,9 +1278,9 @@ version = "0.1.17" [[deps.LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "b8ea0abe6cc872996e87356951d286d25d485aba" +git-tree-sha1 = "866ce84b15e54d758c11946aacd4e5df0e60b7a3" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.1.9" +version = "2.6.1" [deps.LazyArrays.extensions] LazyArraysBandedMatricesExt = "BandedMatrices" @@ -1203,12 +1298,6 @@ version = "2.1.9" deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" -[[deps.LevyArea]] -deps = ["LinearAlgebra", "Random", "SpecialFunctions"] -git-tree-sha1 = "56513a09b8e0ae6485f34401ea9e2f31357958ec" -uuid = "2d8b4e74-eb68-11e8-0fb9-d5eb67b50637" -version = "1.0.0" - [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" @@ -1233,109 +1322,118 @@ deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" version = "1.11.0+1" +[[deps.LibTracyClient_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d2bc4e1034b2d43076b50f0e34ea094c2cb0a717" +uuid = "ad6e5548-8b26-5c9f-8ef3-ef0ad883f3a5" +version = "0.9.1+6" + [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" [[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c8da7e6a91781c41a863611c7e966098d783c57a" uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] -git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.11+0" +version = "3.4.7+0" [[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "d36c21b9e7c172a44a10484125024495e2625ac0" uuid = 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"2da088d113af58221c52828a80378e16be7d037a" +git-tree-sha1 = "4ab7581296671007fc33f07a721631b8855f4b1d" uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" +version = "4.7.1+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +git-tree-sha1 = "321ccef73a96ba828cd51f2ab5b9f917fa73945a" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.40.1+0" +version = "2.41.0+0" + +[[deps.LineSearch]] +deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] +git-tree-sha1 = "97d502765cc5cf3a722120f50da03c2474efce04" +uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" +version = "0.1.4" +weakdeps = ["LineSearches"] + + [deps.LineSearch.extensions] + LineSearchLineSearchesExt = "LineSearches" [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] -git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d" +git-tree-sha1 = "4adee99b7262ad2a1a4bbbc59d993d24e55ea96f" uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.2.0" +version = "7.4.0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "b2e2dba60642e07c062eb3143770d7e234316772" +deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "c0d1a91a50af6778863d320761f807f641f74935" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.30.2" +version = "3.17.0" [deps.LinearSolve.extensions] LinearSolveBandedMatricesExt = "BandedMatrices" LinearSolveBlockDiagonalsExt = "BlockDiagonals" LinearSolveCUDAExt = "CUDA" LinearSolveCUDSSExt = "CUDSS" - LinearSolveEnzymeExt = ["Enzyme", "EnzymeCore"] - LinearSolveFastAlmostBandedMatricesExt = ["FastAlmostBandedMatrices"] + LinearSolveEnzymeExt = "EnzymeCore" + LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" + LinearSolveFastLapackInterfaceExt = "FastLapackInterface" LinearSolveHYPREExt = "HYPRE" LinearSolveIterativeSolversExt = "IterativeSolvers" LinearSolveKernelAbstractionsExt = "KernelAbstractions" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" - LinearSolvePardisoExt = "Pardiso" - LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" + LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] + LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" + LinearSolveSparseArraysExt = "SparseArrays" + LinearSolveSparspakExt = ["SparseArrays", "Sparspak"] [deps.LinearSolve.weakdeps] BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" + FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" - RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" + RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "a2d09619db4e765091ee5c6ffe8872849de0feea" +git-tree-sha1 = "13ca9e2586b89836fd20cccf56e57e2b9ae7f38f" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.28" +version = "0.3.29" [deps.LogExpFunctions.extensions] LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" @@ -1352,32 +1450,21 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +git-tree-sha1 = "f02b56007b064fbfddb4c9cd60161b6dd0f40df3" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" - -[[deps.LoopVectorization]] -deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "8084c25a250e00ae427a379a5b607e7aed96a2dd" -uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.171" -weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] - - [deps.LoopVectorization.extensions] - ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] - SpecialFunctionsExt = "SpecialFunctions" +version = "1.1.0" [[deps.LoweredCodeUtils]] deps = ["JuliaInterpreter"] -git-tree-sha1 = "eeaedcf337f33c039f9f3a209a8db992deefd7e9" +git-tree-sha1 = "39240b5f66956acfa462d7fe12efe08e26d6d70d" uuid = "6f1432cf-f94c-5a45-995e-cdbf5db27b0b" -version = "2.4.8" +version = "3.2.2" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] -git-tree-sha1 = "f046ccd0c6db2832a9f639e2c669c6fe867e5f4f" +git-tree-sha1 = "5de60bc6cb3899cd318d80d627560fae2e2d99ae" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2024.2.0+0" +version = "2025.0.1+1" [[deps.MLStyle]] git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" @@ -1385,10 +1472,9 @@ uuid = "d8e11817-5142-5d16-987a-aa16d5891078" version = "0.4.17" [[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.13" +version = "0.5.16" [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" @@ -1400,10 +1486,14 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MaybeInplace]] -deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "1b9e613f2ca3b6cdcbfe36381e17ca2b66d4b3a1" +deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] +git-tree-sha1 = "54e2fdc38130c05b42be423e90da3bade29b74bd" uuid = "bb5d69b7-63fc-4a16-80bd-7e42200c7bdb" -version = "0.1.3" +version = "0.1.4" +weakdeps = ["SparseArrays"] + + [deps.MaybeInplace.extensions] + MaybeInplaceSparseArraysExt = "SparseArrays" [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] @@ -1428,26 +1518,40 @@ uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" version = "1.2.0" [[deps.MistyClosures]] -git-tree-sha1 = "50acfee105377cb514c66bc5082458c55c3ecc87" +git-tree-sha1 = "2e96762b9ebf3a97211e0424e488b2fde26cc282" uuid = "dbe65cb8-6be2-42dd-bbc5-4196aaced4f4" -version = "1.0.1" +version = "1.0.3" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.ModelingToolkit]] -deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "ExprTools", "FindFirstFunctions", "ForwardDiff", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "LabelledArrays", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "NaNMath", "NonlinearSolve", "OrderedCollections", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] -git-tree-sha1 = "568a7c80b2e3ff43c6c6c92212deeeba7ff4e639" +deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BlockArrays", "ChainRulesCore", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "DifferentiationInterface", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "EnumX", "ExprTools", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "Moshi", "NaNMath", "NonlinearSolve", "OffsetArrays", "OrderedCollections", "OrdinaryDiffEqCore", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] +git-tree-sha1 = "2c61ddac64df1c7a629b8b222c144e9cbb064453" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "9.26.0" +version = "10.2.0" [deps.ModelingToolkit.extensions] MTKBifurcationKitExt = "BifurcationKit" + MTKCasADiDynamicOptExt = "CasADi" MTKDeepDiffsExt = "DeepDiffs" + MTKFMIExt = "FMI" + MTKInfiniteOptExt = "InfiniteOpt" + MTKLabelledArraysExt = "LabelledArrays" [deps.ModelingToolkit.weakdeps] BifurcationKit = "0f109fa4-8a5d-4b75-95aa-f515264e7665" + CasADi = "c49709b8-5c63-11e9-2fb2-69db5844192f" DeepDiffs = "ab62b9b5-e342-54a8-a765-a90f495de1a6" + FMI = "14a09403-18e3-468f-ad8a-74f8dda2d9ac" + InfiniteOpt = "20393b10-9daf-11e9-18c9-8db751c92c57" + LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800" + +[[deps.Moshi]] +deps = ["ExproniconLite", "Jieko"] +git-tree-sha1 = "453de0fc2be3d11b9b93ca4d0fddd91196dcf1ed" +uuid = "2e0e35c7-a2e4-4343-998d-7ef72827ed2d" +version = "0.3.5" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" @@ -1460,39 +1564,33 @@ version = "0.2.4" [[deps.MultivariatePolynomials]] deps = ["ChainRulesCore", "DataStructures", "LinearAlgebra", "MutableArithmetics"] -git-tree-sha1 = "5c1d1d9361e1417e5a065e1f84dc3686cbdaea21" +git-tree-sha1 = "fade91fe9bee7b142d332fc6ab3f0deea29f637b" uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" -version = "0.5.6" +version = "0.5.9" [[deps.Mustache]] deps = ["Printf", "Tables"] -git-tree-sha1 = "a7cefa21a2ff993bff0456bf7521f46fc077ddf1" +git-tree-sha1 = "3cbd5dda543bc59f2e482607ccf84b633724fc32" uuid = "ffc61752-8dc7-55ee-8c37-f3e9cdd09e70" -version = "1.0.19" +version = "1.0.21" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "898c56fbf8bf71afb0c02146ef26f3a454e88873" +git-tree-sha1 = "491bdcdc943fcbc4c005900d7463c9f216aabf4c" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.4.5" +version = "1.6.4" [[deps.NLSolversBase]] -deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] -git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" +deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] +git-tree-sha1 = "25a6638571a902ecfb1ae2a18fc1575f86b1d4df" uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "7.8.3" - -[[deps.NLsolve]] -deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] -git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1" -uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" -version = "4.5.1" +version = "7.10.0" [[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "190dcada8cf9520198058c4544862b1f88c6c577" +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Random", "ScopedValues", "Statistics"] +git-tree-sha1 = "4abc63cdd8dd9dd925d8e879cda280bedc8013ca" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.21" +version = "0.9.30" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1500,66 +1598,120 @@ version = 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"HarfBuzz_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "275a9a6d85dc86c24d03d1837a0010226a96f540" +uuid = "36c8627f-9965-5494-a995-c6b170f724f3" +version = "1.56.3+0" [[deps.ParameterizedFunctions]] deps = ["DataStructures", "DiffEqBase", "DocStringExtensions", "Latexify", "LinearAlgebra", "ModelingToolkit", "Reexport", "SciMLBase"] -git-tree-sha1 = "8556de70ac4a180805f85a2f5c2274061de67586" +git-tree-sha1 = "1c8bc0a4e007c91a9fcf0c2c411fb416c2662b71" uuid = "65888b18-ceab-5e60-b2b9-181511a3b968" -version = "5.17.0" +version = "5.18.0" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -1665,20 +2017,15 @@ version = "0.12.3" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.1" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = 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= "0.2.4" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "ForwardDiff"] -git-tree-sha1 = "406c29a7f46706d379a3bce45671b4e3a39ddfbc" +git-tree-sha1 = "6d98eace73d82e47f5b16c393de198836d9f790a" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.22" -weakdeps = ["ReverseDiff"] +version = "0.4.27" [deps.PreallocationTools.extensions] PreallocationToolsReverseDiffExt = "ReverseDiff" + PreallocationToolsSparseConnectivityTracerExt = "SparseConnectivityTracer" + + [deps.PreallocationTools.weakdeps] + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" [[deps.PrecompileTools]] deps = ["Preferences"] @@ -1771,9 +2122,15 @@ version = "1.4.3" [[deps.PrettyTables]] deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "66b20dd35966a748321d3b2537c4584cf40387c7" +git-tree-sha1 = "1101cd475833706e4d0e7b122218257178f48f34" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.3.2" +version = "2.4.0" + +[[deps.Primes]] +deps = ["IntegerMathUtils"] +git-tree-sha1 = "25cdd1d20cd005b52fc12cb6be3f75faaf59bb9b" +uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" +version = "0.5.7" [[deps.Printf]] deps = ["Unicode"] @@ -1785,44 +2142,48 @@ uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" [[deps.ProgressMeter]] deps = ["Distributed", "Printf"] -git-tree-sha1 = "8f6bc219586aef8baf0ff9a5fe16ee9c70cb65e4" +git-tree-sha1 = "13c5103482a8ed1536a54c08d0e742ae3dca2d42" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.10.2" +version = "1.10.4" [[deps.PtrArrays]] -git-tree-sha1 = "f011fbb92c4d401059b2212c05c0601b70f8b759" +git-tree-sha1 = "1d36ef11a9aaf1e8b74dacc6a731dd1de8fd493d" uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" -version = "1.2.0" +version = "1.3.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", 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-git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" +git-tree-sha1 = "dbe5fd0b334694e905cb9fda73cd8554333c46e2" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.7.0" +version = "1.7.1" [[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +deps = ["Random"] +git-tree-sha1 = "c6ec94d2aaba1ab2ff983052cf6a606ca5985902" uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" +version = "1.6.0" [[deps.RealDot]] deps = ["LinearAlgebra"] @@ -1863,10 +2224,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "b450d967a770fb13d0e26358f58375e20361cf9c" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "2e154f7d7e38db1af0a14ec751aba33360c3bef9" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.26.0" +version = "3.33.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1874,6 +2235,8 @@ version = "3.26.0" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] + RecursiveArrayToolsStructArraysExt = "StructArrays" RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" @@ -1883,15 +2246,11 @@ version = "3.26.0" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" -[[deps.RecursiveFactorization]] -deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] -git-tree-sha1 = "6db1a75507051bc18bfa131fbc7c3f169cc4b2f6" -uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" -version = "0.2.23" - [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" @@ -1905,9 +2264,9 @@ version = "1.0.1" [[deps.Requires]] deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +git-tree-sha1 = "62389eeff14780bfe55195b7204c0d8738436d64" uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" +version = "1.3.1" [[deps.ResettableStacks]] deps = ["StaticArrays"] @@ -1917,27 +2276,33 @@ version = "1.1.1" [[deps.ReverseDiff]] deps = ["ChainRulesCore", "DiffResults", "DiffRules", "ForwardDiff", "FunctionWrappers", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "SpecialFunctions", "StaticArrays", "Statistics"] -git-tree-sha1 = "cc6cd622481ea366bb9067859446a8b01d92b468" +git-tree-sha1 = "3ab8eee3620451b09f0272c271875b4bc02146d9" uuid = "37e2e3b7-166d-5795-8a7a-e32c996b4267" -version = "1.15.3" +version = "1.16.1" [[deps.Rmath]] deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +git-tree-sha1 = "852bd0f55565a9e973fcfee83a84413270224dc4" uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" +version = "0.8.0" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" +git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.2+0" +version = "0.5.1+0" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +git-tree-sha1 = "86a8a8b783481e1ea6b9c91dd949cb32191f8ab4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.13" +version = "0.5.15" + +[[deps.SCCNonlinearSolve]] +deps = ["CommonSolve", "PrecompileTools", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] +git-tree-sha1 = "5e67b56af8615d1b47720fdc04e34482279c4559" +uuid = "9dfe8606-65a1-4bb3-9748-cb89d1561431" +version = "1.2.0" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" @@ -1948,30 +2313,26 @@ git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" uuid = "94e857df-77ce-4151-89e5-788b33177be4" version = "0.1.0" -[[deps.SLEEFPirates]] -deps = ["IfElse", "Static", "VectorizationBase"] -git-tree-sha1 = "456f610ca2fbd1c14f5fcf31c6bfadc55e7d66e0" -uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" -version = "0.6.43" - [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "ddb59473b85372c4a71b082e6862503e550fd97c" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "04bbcdc8d1f7d6f667f75fbcc68728231e21fabe" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.44.0" +version = "2.101.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" + SciMLBaseZygoteExt = ["Zygote", "ChainRulesCore"] [deps.SciMLBase.weakdeps] ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" @@ -1985,23 +2346,51 @@ git-tree-sha1 = "f4076dd5a103010d48bb6c4e50c5526f6622fa96" uuid = "31c91b34-3c75-11e9-0341-95557aab0344" version = "0.1.3" +[[deps.SciMLJacobianOperators]] +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] +git-tree-sha1 = "7da1216346ad79499d08d7e2a3dbf297dc80c829" +uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" +version = "0.1.6" + [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] -git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools"] +git-tree-sha1 = "3249fe77f322fe539e935ecb388c8290cd38a3fc" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.8" +version = "1.3.1" +weakdeps = ["SparseArrays", "StaticArraysCore"] + + [deps.SciMLOperators.extensions] + SciMLOperatorsSparseArraysExt = "SparseArrays" + SciMLOperatorsStaticArraysCoreExt = "StaticArraysCore" + +[[deps.SciMLPublic]] +git-tree-sha1 = "ed647f161e8b3f2973f24979ec074e8d084f1bee" +uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b" +version = "1.0.0" [[deps.SciMLSensitivity]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "Distributions", "EllipsisNotation", "Enzyme", "FiniteDiff", "ForwardDiff", "FunctionProperties", "FunctionWrappersWrappers", "Functors", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEq", "Parameters", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLOperators", "SciMLStructures", "SparseDiffTools", "StaticArrays", "StaticArraysCore", "Statistics", "StochasticDiffEq", "SymbolicIndexingInterface", "Tracker", "TruncatedStacktraces", "Zygote"] -git-tree-sha1 = "0b677567d07f4447f79f6e12a01db5c4dc02e54f" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "Distributions", "Enzyme", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionProperties", "FunctionWrappersWrappers", "Functors", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEqCore", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLJacobianOperators", "SciMLStructures", "StaticArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tracker", "Zygote"] +git-tree-sha1 = "22402dfac0823491e0d3ae3b916940e6761f6e86" uuid = "1ed8b502-d754-442c-8d5d-10ac956f44a1" -version = "7.64.0" +version = "7.84.0" + + [deps.SciMLSensitivity.extensions] + SciMLSensitivityMooncakeExt = "Mooncake" + + [deps.SciMLSensitivity.weakdeps] + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.SciMLStructures]] deps = ["ArrayInterface"] -git-tree-sha1 = "cfdd1200d150df1d3c055cc72ee6850742e982d7" +git-tree-sha1 = "566c4ed301ccb2a44cbd5a27da5f885e0ed1d5df" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.4.1" +version = "1.7.0" + +[[deps.ScopedValues]] +deps = ["HashArrayMappedTries", "Logging"] +git-tree-sha1 = "1147f140b4c8ddab224c94efa9569fc23d63ab44" +uuid = "7e506255-f358-4e82-b7e4-beb19740aa63" +version = "1.3.0" [[deps.Scratch]] deps = ["Dates"] @@ -2011,18 +2400,18 @@ version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "ff11acffdb082493657550959d4feb4b6149e73a" +git-tree-sha1 = "712fb0231ee6f9120e005ccd56297abbc053e7e0" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.5" +version = "1.4.8" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +git-tree-sha1 = "c5391c6ace3bc430ca630251d02ea9687169ca68" uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" +version = "1.1.2" [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] @@ -2035,22 +2424,22 @@ uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" version = "1.0.3" [[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +git-tree-sha1 = "f305871d2f381d21527c770d4788c06c097c9bc1" uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" +version = "1.2.0" [[deps.SimpleNonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "03c21a4c373c7c3aa77611430068badaa073d740" +deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "7aaa5fe4617271b64fce0466d187f2a72edbd81a" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "1.11.0" -weakdeps = ["ChainRulesCore", "ReverseDiff", "Tracker", "Zygote"] +version = "2.5.0" +weakdeps = ["ChainRulesCore", "DiffEqBase", "ReverseDiff", "Tracker"] [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" + SimpleNonlinearSolveDiffEqBaseExt = "DiffEqBase" SimpleNonlinearSolveReverseDiffExt = "ReverseDiff" SimpleNonlinearSolveTrackerExt = "Tracker" - SimpleNonlinearSolveZygoteExt = "Zygote" [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] @@ -2083,26 +2472,6 @@ deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" version = "1.10.0" -[[deps.SparseDiffTools]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "469f51f8c4741ce944be2c0b65423b518b1405b0" -uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.19.0" - - [deps.SparseDiffTools.extensions] - SparseDiffToolsEnzymeExt = "Enzyme" - SparseDiffToolsPolyesterExt = "Polyester" - SparseDiffToolsPolyesterForwardDiffExt = "PolyesterForwardDiff" - SparseDiffToolsSymbolicsExt = "Symbolics" - SparseDiffToolsZygoteExt = "Zygote" - - [deps.SparseDiffTools.weakdeps] - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" - PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" @@ -2110,38 +2479,46 @@ uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" version = "0.1.2" [[deps.SparseMatrixColorings]] -deps = ["ADTypes", "Compat", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "277e10c002cd780a752bded3b95a8cbc791d646b" +deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] +git-tree-sha1 = "ab958b4fec46d1f1d057bb8e2a99bfdb90744646" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.3.5" +version = "0.4.20" -[[deps.Sparspak]] -deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] -git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" -uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" -version = "0.3.9" + [deps.SparseMatrixColorings.extensions] + SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" + SparseMatrixColoringsColorsExt = "Colors" + + [deps.SparseMatrixColorings.weakdeps] + CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +git-tree-sha1 = "41852b8679f78c8d8961eeadc8f62cef861a52e3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.4.0" +version = "2.5.1" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" +[[deps.StableRNGs]] +deps = ["Random"] +git-tree-sha1 = "95af145932c2ed859b63329952ce8d633719f091" +uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" +version = "1.0.3" + [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools"] -git-tree-sha1 = "87d51a3ee9a4b0d2fe054bdd3fc2436258db2603" +git-tree-sha1 = "f737d444cb0ad07e61b3c1bef8eb91203c321eff" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.1.1" +version = "1.2.0" [[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "8963e5a083c837531298fc41599182a759a87a6d" +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Static"] +git-tree-sha1 = "96381d50f1ce85f2663584c8e886a6ca97e60554" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.5.1" +version = "1.8.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -2150,9 +2527,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "eeafab08ae20c62c44c8399ccb9354a04b80db50" +git-tree-sha1 = "0feb6b9031bd5c51f9072393eb5ab3efd31bf9e4" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.7" +version = "1.9.13" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2171,33 +2548,27 @@ version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +git-tree-sha1 = "9d72a13a3f4dd3795a195ac5a44d7d6ff5f552ff" uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" +version = "1.7.1" [[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +deps = ["AliasTables", "DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "b81c5035922cc89c2d9523afc6c54be512411466" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.3" +version = "0.34.5" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +git-tree-sha1 = "8e45cecc66f3b42633b8ce14d431e8e57a3e242e" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.1" +version = "1.5.0" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" -[[deps.StochasticDiffEq]] -deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "5237f2ebdf3b6b7ad2ec635440b59a390988feeb" -uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" -version = "6.66.0" - [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] git-tree-sha1 = "f35f6ab602df8413a50c4a25ca14de821e8605fb" @@ -2212,28 +2583,28 @@ version = "0.3.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +git-tree-sha1 = "725421ae8e530ec29bcbdddbe91ff8053421d023" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" +version = "0.4.1" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +git-tree-sha1 = "8ad2e38cbb812e29348719cc63580ec1dfeb9de4" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.18" -weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] +version = "0.7.1" +weakdeps = ["Adapt", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "SparseArrays", "StaticArrays"] [deps.StructArrays.extensions] StructArraysAdaptExt = "Adapt" - StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysGPUArraysCoreExt = ["GPUArraysCore", "KernelAbstractions"] + StructArraysLinearAlgebraExt = "LinearAlgebra" StructArraysSparseArraysExt = "SparseArrays" StructArraysStaticArraysExt = "StaticArrays" [[deps.StructIO]] -deps = ["Test"] -git-tree-sha1 = "010dc73c7146869c042b49adcdb6bf528c12e859" +git-tree-sha1 = "c581be48ae1cbf83e899b14c07a807e1787512cc" uuid = "53d494c1-5632-5724-8f4c-31dff12d585f" -version = "0.3.0" +version = "0.3.1" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] @@ -2245,38 +2616,50 @@ uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "9c490ee01823dc443da25bf9225827e3cdd2d7e9" +deps = ["Accessors", "ArrayInterface", "PrettyTables", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b6a641e38efa01355aa721246dd246e10c7dcd4d" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.26" +version = "0.3.40" [[deps.SymbolicLimits]] deps = ["SymbolicUtils"] -git-tree-sha1 = "fb099adbd7504f1e68b4512828e9d94197a8b889" +git-tree-sha1 = "fabf4650afe966a2ba646cabd924c3fd43577fc3" uuid = "19f23fe9-fdab-4a78-91af-e7b7767979c3" -version = "0.2.1" +version = "0.2.2" [[deps.SymbolicUtils]] -deps = ["AbstractTrees", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LabelledArrays", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TermInterface", "TimerOutputs", "Unityper"] -git-tree-sha1 = "9345b7b8a2923abaf6089d9f7306bb712fecb840" +deps = ["AbstractTrees", "ArrayInterface", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "ExproniconLite", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "TimerOutputs", "Unityper", "WeakValueDicts"] +git-tree-sha1 = "fa63e8f55e99aee528951ba26544403b09645979" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "2.1.2" +version = "3.29.0" + + [deps.SymbolicUtils.extensions] + SymbolicUtilsLabelledArraysExt = "LabelledArrays" + SymbolicUtilsReverseDiffExt = "ReverseDiff" + + [deps.SymbolicUtils.weakdeps] + LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" [[deps.Symbolics]] -deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "ForwardDiff", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "RecipesBase", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "44356a85991385883acd0f41ef66c6f770d9a2e7" +deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "LaTeXStrings", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "OffsetArrays", "PrecompileTools", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] +git-tree-sha1 = "3d9551301d9ecdb8c193aac2ed0a3efc303494ca" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "5.34.0" +version = "6.41.0" [deps.Symbolics.extensions] + SymbolicsForwardDiffExt = "ForwardDiff" SymbolicsGroebnerExt = "Groebner" - SymbolicsLuxCoreExt = "LuxCore" - SymbolicsPreallocationToolsExt = "PreallocationTools" + SymbolicsLuxExt = "Lux" + SymbolicsNemoExt = "Nemo" + SymbolicsPreallocationToolsExt = ["PreallocationTools", "ForwardDiff"] SymbolicsSymPyExt = "SymPy" [deps.Symbolics.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Groebner = "0b43b601-686d-58a3-8a1c-6623616c7cd4" - LuxCore = "bb33d45b-7691-41d6-9220-0943567d0623" + Lux = "b2108857-7c20-44ae-9111-449ecde12c47" + Nemo = "2edaba10-b0f1-5616-af89-8c11ac63239a" PreallocationTools = "d236fae5-4411-538c-8e31-a6e3d9e00b46" SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" @@ -2299,24 +2682,26 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "598cd7c1f68d1e205689b1c2fe65a9f85846f297" +git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.12.0" +version = "1.12.1" [[deps.Tapir]] deps = ["ADTypes", "ChainRulesCore", "DiffRules", "DiffTests", "ExprTools", "Graphs", "InteractiveUtils", "LinearAlgebra", "MistyClosures", "Random", "Setfield", "Test"] -git-tree-sha1 = "69b2bfce6888ec57a8f326828c4a764d52899f49" +git-tree-sha1 = "9bb62e5f35f8df9badf635235f5c05ba33e4841e" uuid = "07d77754-e150-4737-8c94-cd238a1fb45b" -version = "0.2.26" +version = "0.2.51" [deps.Tapir.extensions] TapirCUDAExt = "CUDA" + TapirDynamicPPLExt = "DynamicPPL" TapirJETExt = "JET" TapirLogDensityProblemsADExt = "LogDensityProblemsAD" TapirSpecialFunctionsExt = "SpecialFunctions" [deps.Tapir.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + DynamicPPL = "366bfd00-2699-11ea-058f-f148b4cae6d8" JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" LogDensityProblemsAD = "996a588d-648d-4e1f-a8f0-a84b347e47b1" SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" @@ -2326,6 +2711,11 @@ deps = ["ArgTools", "SHA"] uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" version = "1.10.0" +[[deps.TaskLocalValues]] +git-tree-sha1 = "d155450e6dff2a8bc2fcb81dcb194bd98b0aeb46" +uuid = "ed4db957-447d-4319-bfb6-7fa9ae7ecf34" +version = "0.1.2" + [[deps.TensorCore]] deps = ["LinearAlgebra"] git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" @@ -2333,60 +2723,68 @@ uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" version = "0.1.1" [[deps.TermInterface]] -git-tree-sha1 = "6f0cee95e74d1f6891ba6b35b8b219fd3d11b567" +git-tree-sha1 = "d673e0aca9e46a2f63720201f55cc7b3e7169b16" uuid = "8ea1fca8-c5ef-4a55-8b96-4e9afe9c9a3c" -version = "0.4.1" +version = "2.0.0" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +[[deps.TestItems]] +git-tree-sha1 = "42fd9023fef18b9b78c8343a4e2f3813ffbcefcb" +uuid = "1c621080-faea-4a02-84b6-bbd5e436b8fe" +version = "1.0.0" + [[deps.ThreadingUtilities]] deps = ["ManualMemory"] -git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27" +git-tree-sha1 = "d969183d3d244b6c33796b5ed01ab97328f2db85" uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.2" +version = "0.5.5" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] -git-tree-sha1 = "5a13ae8a41237cff5ecf34f73eb1b8f42fff6531" +git-tree-sha1 = "3748bd928e68c7c346b52125cf41fff0de6937d0" uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.24" - -[[deps.Tokenize]] -git-tree-sha1 = "468b4685af4abe0e9fd4d7bf495a6554a6276e75" -uuid = "0796e94c-ce3b-5d07-9a54-7f471281c624" version = "0.5.29" + [deps.TimerOutputs.extensions] + FlameGraphsExt = "FlameGraphs" + + [deps.TimerOutputs.weakdeps] + FlameGraphs = "08572546-2f56-4bcf-ba4e-bab62c3a3f89" + [[deps.Tracker]] deps = ["Adapt", "ChainRulesCore", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "5158100ed55411867674576788e710a815a0af02" +git-tree-sha1 = "83697ba2237663355de8fb0a800144cda44848a0" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.34" +version = "0.2.38" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" -[[deps.TranscodingStreams]] -git-tree-sha1 = "96612ac5365777520c3c5396314c8cf7408f436a" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.11.1" -weakdeps = ["Random", "Test"] +[[deps.Tracy]] +deps = ["ExprTools", "LibTracyClient_jll", "Libdl"] +git-tree-sha1 = "16439d004690d4086da35528f0c6b4d7006d6dae" +uuid = "e689c965-62c8-4b79-b2c5-8359227902fd" +version = "0.1.4" - [deps.TranscodingStreams.extensions] - TestExt = ["Test", "Random"] + [deps.Tracy.extensions] + TracyProfilerExt = "TracyProfiler_jll" -[[deps.TriangularSolve]] -deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "be986ad9dac14888ba338c2554dcfec6939e1393" -uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.2.1" + [deps.Tracy.weakdeps] + TracyProfiler_jll = "0c351ed6-8a68-550e-8b79-de6f926da83c" + +[[deps.TranscodingStreams]] +git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.11.3" [[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" +git-tree-sha1 = "6cae795a5a9313bbb4f60683f7263318fc7d1505" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" +version = "0.1.10" [[deps.TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] @@ -2395,9 +2793,9 @@ uuid = "781d530d-4396-4725-bb49-402e4bee1e77" version = "1.4.0" [[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +git-tree-sha1 = "cbbebadbcc76c5ca1cc4b4f3b0614b3e603b5000" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" +version = "1.5.2" [[deps.UUIDs]] deps = ["Random", "SHA"] @@ -2419,20 +2817,22 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "d95fe458f26209c66a187b1114df96fd70839efd" +git-tree-sha1 = "d2282232f8a4d71f79e85dc4dd45e5b12a6297fb" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.21.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] +version = "1.23.1" +weakdeps = ["ConstructionBase", "ForwardDiff", "InverseFunctions", "Printf"] [deps.Unitful.extensions] ConstructionBaseUnitfulExt = "ConstructionBase" + ForwardDiffExt = "ForwardDiff" InverseFunctionsUnitfulExt = "InverseFunctions" + PrintfExt = "Printf" [[deps.UnitfulLatexify]] deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "975c354fcd5f7e1ddcc1f1a23e6e091d99e99bc8" +git-tree-sha1 = "af305cc62419f9bd61b6644d19170a4d258c7967" uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.4" +version = "1.7.0" [[deps.Unityper]] deps = ["ConstructionBase"] @@ -2441,38 +2841,24 @@ uuid = "a7c27f48-0311-42f6-a7f8-2c11e75eb415" version = "0.1.6" [[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +git-tree-sha1 = "b13c4edda90890e5b04ba24e20a310fbe6f249ff" uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" +version = "0.3.0" +weakdeps = ["LLVM"] -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "bf2c553f25e954a9b38c9c0593a59bb13113f9e5" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.5" + [deps.UnsafeAtomics.extensions] + UnsafeAtomicsLLVM = ["LLVM"] [[deps.Unzip]] git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" version = "0.2.0" -[[deps.VectorizationBase]] -deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "e7f5b81c65eb858bed630fe006837b935518aca5" -uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.70" - [[deps.VersionParsing]] git-tree-sha1 = "58d6e80b4ee071f5efd07fda82cb9fbe17200868" uuid = "81def892-9a0e-5fdd-b105-ffc91e053289" version = "1.3.0" -[[deps.VertexSafeGraphs]] -deps = ["Graphs"] -git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" -uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" -version = "0.2.0" - [[deps.Vulkan_Loader_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" @@ -2480,16 +2866,21 @@ uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" version = "1.3.243+0" [[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "XML2_jll"] +git-tree-sha1 = "49be0be57db8f863a902d59c0083d73281ecae8e" uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" +version = "1.23.1+0" [[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "54b8a029ac145ebe8299463447fd1590b2b1d92f" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.31.0+0" +version = "1.44.0+0" + +[[deps.WeakValueDicts]] +git-tree-sha1 = "98528c2610a5479f091d470967a25becfd83edd0" +uuid = "897b6980-f191-5a31-bcb0-bf3c4585e0c1" +version = "0.1.0" [[deps.Weave]] deps = ["Base64", "Dates", "Highlights", "JSON", "Markdown", "Mustache", "Pkg", "Printf", "REPL", "RelocatableFolders", "Requires", "Serialization", "YAML"] @@ -2499,111 +2890,99 @@ version = "0.10.12" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "d9717ce3518dc68a99e6b96300813760d887a01d" +git-tree-sha1 = "b8b243e47228b4a3877f1dd6aee0c5d56db7fcf4" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.13.1+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "a54ee957f4c86b526460a720dbc882fa5edcbefc" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.41+0" +version = "2.13.6+1" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +git-tree-sha1 = "fee71455b0aaa3440dfdd54a9a36ccef829be7d4" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.6+0" +version = "5.8.1+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +git-tree-sha1 = 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-version = "1.3.6+0" +version = "1.3.7+0" [[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "9caba99d38404b285db8801d5c45ef4f4f425a6d" uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" +version = "6.0.1+0" [[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "a376af5c7ae60d29825164db40787f15c80c7c54" uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" +version = "1.8.3+0" [[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll"] +git-tree-sha1 = "a5bc75478d323358a90dc36766f3c99ba7feb024" uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" +version = "1.1.6+0" [[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "aff463c82a773cb86061bce8d53a0d976854923e" uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" +version = "1.5.5+0" [[deps.Xorg_libXrender_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +git-tree-sha1 = "7ed9347888fac59a618302ee38216dd0379c480d" uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.11+0" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" +version = "0.9.12+0" [[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "bcd466676fef0878338c61e655629fa7bbc69d8e" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] +git-tree-sha1 = "bfcaf7ec088eaba362093393fe11aa141fa15422" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.17.0+0" +version = "1.17.1+0" [[deps.Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +git-tree-sha1 = "e3150c7400c41e207012b41659591f083f3ef795" uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" +version = "1.1.3+0" [[deps.Xorg_xcb_util_cursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] @@ -2612,70 +2991,70 @@ uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" version = "0.1.4+0" [[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f4fc02e384b74418679983a97385644b67e1263b" uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll"] +git-tree-sha1 = "68da27247e7d8d8dafd1fcf0c3654ad6506f5f97" uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "44ec54b0e2acd408b0fb361e1e9244c60c9c3dd4" uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "5b0263b6d080716a02544c55fdff2c8d7f9a16a0" uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" +version = "0.3.10+0" [[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f233c83cad1fa0e70b7771e0e21b061a116f2763" uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" +version = "0.4.2+0" [[deps.Xorg_xkbcomp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +git-tree-sha1 = "801a858fc9fb90c11ffddee1801bb06a738bda9b" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" +version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" +version = "2.44.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +git-tree-sha1 = "a63799ff68005991f9d9491b6e95bd3478d783cb" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" +version = "1.6.0+0" [[deps.YAML]] deps = ["Base64", "Dates", "Printf", "StringEncodings"] -git-tree-sha1 = "80c3218f29cbc47111ac87e7be5e69cc05c6dd36" +git-tree-sha1 = "2f58ac39f64b41fb812340347525be3b590cce3b" uuid = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" -version = "0.4.11" +version = "0.4.14" [[deps.ZMQ]] deps = ["FileWatching", "PrecompileTools", "Sockets", "ZeroMQ_jll"] -git-tree-sha1 = "ad6944a6b3dfd8e95920e48355d3baf510319262" +git-tree-sha1 = "33333bdded3835f81b9b6353da9243dc4ec62e0f" uuid = "c2297ded-f4af-51ae-bb23-16f91089e4e1" -version = "1.2.6" +version = "1.4.0" [[deps.ZeroMQ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "libsodium_jll"] -git-tree-sha1 = "42f97fb27394378591666ab0e9cee369e6d0e1f9" +git-tree-sha1 = "766d90db2817565b667c1cc9cc420d668f2e8dba" uuid = "8f1865be-045e-5c20-9c9f-bfbfb0764568" -version = "4.3.5+0" +version = "4.3.6+0" [[deps.Zlib_jll]] deps = ["Libdl"] @@ -2684,104 +3063,110 @@ version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" +git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.6+0" +version = "1.5.7+1" [[deps.Zygote]] -deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "19c586905e78a26f7e4e97f81716057bd6b1bc54" +deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] +git-tree-sha1 = "f0ecdb1c4c6ade4364ab55e6c5d2f5b1eeed06ad" uuid = 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"c3b0e6196d50eab0c5ed34021aaa0bb463489510" uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" +version = "3.2.14+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" +git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.43.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" +version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" +git-tree-sha1 = "522c1df09d05a71785765d19c9524661234738e9" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.9.0+0" +version = "3.11.0+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e17c115d55c5fbb7e52ebedb427a0dca79d4484e" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.15.2+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+1" +version = "5.11.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8a22cf860a7d27e4f3498a0fe0811a7957badb38" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.3+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +git-tree-sha1 = "002748401f7b520273e2b506f61cab95d4701ccf" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.43+1" +version = "1.6.48+0" [[deps.libsodium_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "848ab3d00fe39d6fbc2a8641048f8f272af1c51e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "011b0a7331b41c25524b64dc42afc9683ee89026" uuid = "a9144af2-ca23-56d9-984f-0d03f7b5ccf8" -version = "1.0.20+0" +version = "1.0.21+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.7+2" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] @@ -2790,9 +3175,9 @@ version = "1.52.0+1" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +git-tree-sha1 = "d5a767a3bb77135a99e433afe0eb14cd7f6914c3" uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" -version = "2021.12.0+0" +version = "2022.0.0+0" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] @@ -2812,7 +3197,7 @@ uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" version = "3.5.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "c950ae0a3577aec97bfccf3381f66666bc416729" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.8.1+0" diff --git a/benchmarks/AutomaticDifferentiation/Project.toml b/benchmarks/AutomaticDifferentiation/Project.toml index 2fe44acf9..37f995e71 100644 --- a/benchmarks/AutomaticDifferentiation/Project.toml +++ b/benchmarks/AutomaticDifferentiation/Project.toml @@ -27,7 +27,7 @@ Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" BenchmarkTools = "1" DataFrames = "1" DataFramesMeta = "0.15" -DifferentiationInterface = "0.9" +DifferentiationInterface = "0.6" DifferentiationInterfaceTest = "0.10" Enzyme = "0.13" FiniteDiff = "2" From ef6948be472dad831021c0b8afebd91d4df715f1 Mon Sep 17 00:00:00 2001 From: Chris Rackauckas Date: Sun, 15 Jun 2025 21:14:20 +0000 Subject: [PATCH 2/4] Remove Tapir --- .../AutomaticDifferentiation/JuliaAD.jmd | 4 +- .../AutomaticDifferentiation/Manifest.toml | 77 ++++++------------- .../AutomaticDifferentiation/Project.toml | 2 - 3 files changed, 25 insertions(+), 58 deletions(-) diff --git a/benchmarks/AutomaticDifferentiation/JuliaAD.jmd b/benchmarks/AutomaticDifferentiation/JuliaAD.jmd index 154b4f880..312321d87 100644 --- a/benchmarks/AutomaticDifferentiation/JuliaAD.jmd +++ b/benchmarks/AutomaticDifferentiation/JuliaAD.jmd @@ -5,7 +5,7 @@ author: Guillaume Dalle and Chris Rackauckas ```julia using DifferentiationInterface, DifferentiationInterfaceTest, DataFrames, DataFramesMeta -import Enzyme, Zygote, Tapir +import Enzyme, Zygote, Mooncake import Markdown, PrettyTables, Printf function paritytrig(x::AbstractVector{T}) where {T} @@ -22,7 +22,7 @@ end backends = [ AutoEnzyme(mode=Enzyme.Reverse), - AutoTapir(safe_mode=false), + AutoMooncake(safe_mode=false), AutoZygote(), ]; diff --git a/benchmarks/AutomaticDifferentiation/Manifest.toml b/benchmarks/AutomaticDifferentiation/Manifest.toml index 80baa5cb0..c45374300 100644 --- a/benchmarks/AutomaticDifferentiation/Manifest.toml +++ b/benchmarks/AutomaticDifferentiation/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.10.9" manifest_format = "2.0" -project_hash = "2f8589a6d69c1295560560ec337d9570e195b2ce" +project_hash = "2983b00da262042be0b35f9018f9bdaee47ee5fc" [[deps.ADTypes]] git-tree-sha1 = "e2478490447631aedba0823d4d7a80b2cc8cdb32" @@ -236,9 +236,9 @@ version = "0.6.0" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "204e9b212da5cc7df632b58af8d49763383f47fa" +git-tree-sha1 = "224f9dc510986549c8139def08e06f78c562514d" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.72.4" +version = "1.72.5" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] @@ -524,12 +524,6 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" -[[deps.DiffTests]] -deps = ["LinearAlgebra", "SparseArrays", "Statistics"] -git-tree-sha1 = "b92beb1933df01bf4915d3a05e54c2a0aad312c7" -uuid = "de460e47-3fe3-5279-bb4a-814414816d5d" -version = "0.1.2" - [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] git-tree-sha1 = "c8d85ecfcbaef899308706bebdd8b00107f3fb43" @@ -689,9 +683,9 @@ version = "1.0.5" [[deps.Enzyme]] deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "InteractiveUtils", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "PrecompileTools", "Preferences", "Printf", "Random", "SparseArrays"] -git-tree-sha1 = "ef9aa10938d97cd42c524482eda5c523ec4bf0d5" +git-tree-sha1 = "626bc1d9fed8b23c6dfb4e28aa8ab2206c648727" uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" -version = "0.13.49" +version = "0.13.50" [deps.Enzyme.extensions] EnzymeBFloat16sExt = "BFloat16s" @@ -710,9 +704,9 @@ version = "0.13.49" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.EnzymeCore]] -git-tree-sha1 = "7d7822a643c33bbff4eab9c87ca8459d7c688db0" +git-tree-sha1 = "8272a687bca7b5c601c0c24fc0c71bff10aafdfd" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.11" +version = "0.8.12" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] @@ -720,9 +714,9 @@ weakdeps = ["Adapt"] [[deps.Enzyme_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "168b7e5924b1fdb14bb246e7263438bb26d040c5" +git-tree-sha1 = "9599f53973676cdb42f177d7c34b8374a9a68c42" uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" -version = "0.0.181+0" +version = "0.0.182+0" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1029,9 +1023,9 @@ version = "0.3.28" [[deps.IJulia]] deps = ["Base64", "Conda", "Dates", "InteractiveUtils", "JSON", "Logging", "Markdown", "MbedTLS", "Pkg", "Printf", "REPL", "Random", "SoftGlobalScope", "UUIDs", "ZMQ"] -git-tree-sha1 = "5bea4d841d5db750a1bb5ccdc37b2759dfa80066" +git-tree-sha1 = "9e60d328aa8060368d6dadd24b644d0ebaf0c1cb" uuid = "7073ff75-c697-5162-941a-fcdaad2a7d2a" -version = "1.28.1" +version = "1.29.0" [[deps.IRTools]] deps = ["InteractiveUtils", "MacroTools"] @@ -1056,9 +1050,9 @@ uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" version = "0.1.5" [[deps.InlineStrings]] -git-tree-sha1 = "6a9fde685a7ac1eb3495f8e812c5a7c3711c2d5e" +git-tree-sha1 = "8594fac023c5ce1ef78260f24d1ad18b4327b420" uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.3" +version = "1.4.4" [deps.InlineStrings.extensions] ArrowTypesExt = "ArrowTypes" @@ -1517,11 +1511,6 @@ git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" version = "1.2.0" -[[deps.MistyClosures]] -git-tree-sha1 = "2e96762b9ebf3a97211e0424e488b2fde26cc282" -uuid = "dbe65cb8-6be2-42dd-bbc5-4196aaced4f4" -version = "1.0.3" - [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" @@ -2046,9 +2035,9 @@ version = "1.4.3" [[deps.Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "809ba625a00c605f8d00cd2a9ae19ce34fc24d68" +git-tree-sha1 = "28ea788b78009c695eb0d637587c81d26bdf0e36" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.40.13" +version = "1.40.14" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -2370,9 +2359,9 @@ version = "1.0.0" [[deps.SciMLSensitivity]] deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "Distributions", "Enzyme", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionProperties", "FunctionWrappersWrappers", "Functors", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEqCore", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLJacobianOperators", "SciMLStructures", "StaticArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tracker", "Zygote"] -git-tree-sha1 = "22402dfac0823491e0d3ae3b916940e6761f6e86" +git-tree-sha1 = "1881447dcf869773898a2443008a1de9b6221ec7" uuid = "1ed8b502-d754-442c-8d5d-10ac956f44a1" -version = "7.84.0" +version = "7.85.0" [deps.SciMLSensitivity.extensions] SciMLSensitivityMooncakeExt = "Mooncake" @@ -2686,26 +2675,6 @@ git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" version = "1.12.1" -[[deps.Tapir]] -deps = ["ADTypes", "ChainRulesCore", "DiffRules", "DiffTests", "ExprTools", "Graphs", "InteractiveUtils", "LinearAlgebra", "MistyClosures", "Random", "Setfield", "Test"] -git-tree-sha1 = "9bb62e5f35f8df9badf635235f5c05ba33e4841e" -uuid = "07d77754-e150-4737-8c94-cd238a1fb45b" -version = "0.2.51" - - [deps.Tapir.extensions] - TapirCUDAExt = "CUDA" - TapirDynamicPPLExt = "DynamicPPL" - TapirJETExt = "JET" - TapirLogDensityProblemsADExt = "LogDensityProblemsAD" - TapirSpecialFunctionsExt = "SpecialFunctions" - - [deps.Tapir.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - DynamicPPL = "366bfd00-2699-11ea-058f-f148b4cae6d8" - JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" - LogDensityProblemsAD = "996a588d-648d-4e1f-a8f0-a84b347e47b1" - SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" - [[deps.Tar]] deps = ["ArgTools", "SHA"] uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" @@ -3046,9 +3015,9 @@ version = "0.4.14" [[deps.ZMQ]] deps = ["FileWatching", "PrecompileTools", "Sockets", "ZeroMQ_jll"] -git-tree-sha1 = "33333bdded3835f81b9b6353da9243dc4ec62e0f" +git-tree-sha1 = "2d060e1f014c07561817bf6f3c0eb66b309e04bd" uuid = "c2297ded-f4af-51ae-bb23-16f91089e4e1" -version = "1.4.0" +version = "1.4.1" [[deps.ZeroMQ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "libsodium_jll"] @@ -3069,9 +3038,9 @@ version = "1.5.7+1" [[deps.Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "f0ecdb1c4c6ade4364ab55e6c5d2f5b1eeed06ad" +git-tree-sha1 = "a29cbf3968d36022198bcc6f23fdfd70f7caf737" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.7.9" +version = "0.7.10" [deps.Zygote.extensions] ZygoteAtomExt = "Atom" @@ -3146,9 +3115,9 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "002748401f7b520273e2b506f61cab95d4701ccf" +git-tree-sha1 = "cd155272a3738da6db765745b89e466fa64d0830" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.48+0" +version = "1.6.49+0" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] diff --git a/benchmarks/AutomaticDifferentiation/Project.toml b/benchmarks/AutomaticDifferentiation/Project.toml index 37f995e71..71a72828a 100644 --- a/benchmarks/AutomaticDifferentiation/Project.toml +++ b/benchmarks/AutomaticDifferentiation/Project.toml @@ -18,7 +18,6 @@ ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" SciMLSensitivity = "1ed8b502-d754-442c-8d5d-10ac956f44a1" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" -Tapir = "07d77754-e150-4737-8c94-cd238a1fb45b" Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -40,6 +39,5 @@ ReverseDiff = "1" SciMLBenchmarks = "0.1" SciMLSensitivity = "7" StaticArrays = "1" -Tapir = "0.2.26" Tracker = "0.2" Zygote = "0.6, 0.7" From ff66bb4df6b6470a28177529076f95794755b658 Mon Sep 17 00:00:00 2001 From: Christopher Rackauckas Date: Sun, 22 Jun 2025 14:06:24 +0000 Subject: [PATCH 3/4] bump versions --- .../AutomaticDifferentiation/Manifest.toml | 68 ++++++++++--------- 1 file changed, 36 insertions(+), 32 deletions(-) diff --git a/benchmarks/AutomaticDifferentiation/Manifest.toml b/benchmarks/AutomaticDifferentiation/Manifest.toml index c45374300..93c724f4d 100644 --- a/benchmarks/AutomaticDifferentiation/Manifest.toml +++ b/benchmarks/AutomaticDifferentiation/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "2983b00da262042be0b35f9018f9bdaee47ee5fc" [[deps.ADTypes]] -git-tree-sha1 = "e2478490447631aedba0823d4d7a80b2cc8cdb32" +git-tree-sha1 = "be7ae030256b8ef14a441726c4c37766b90b93a3" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.14.0" +version = "1.15.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -498,9 +498,9 @@ version = "6.176.0" [[deps.DiffEqCallbacks]] deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "Functors", "LinearAlgebra", "Markdown", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "76292e889472e810d40a844b714743c0ffb1c53b" +git-tree-sha1 = "91394d44c0c390e7000336447dc5b00047e853f2" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.6.0" +version = "4.7.0" [[deps.DiffEqNoiseProcess]] deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] @@ -683,9 +683,9 @@ version = "1.0.5" [[deps.Enzyme]] deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "InteractiveUtils", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "PrecompileTools", "Preferences", "Printf", "Random", "SparseArrays"] -git-tree-sha1 = "626bc1d9fed8b23c6dfb4e28aa8ab2206c648727" +git-tree-sha1 = "de7f70d73805f4e1a32395afc9d580e4ffc62924" uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" -version = "0.13.50" +version = "0.13.51" [deps.Enzyme.extensions] EnzymeBFloat16sExt = "BFloat16s" @@ -714,9 +714,9 @@ weakdeps = ["Adapt"] [[deps.Enzyme_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "9599f53973676cdb42f177d7c34b8374a9a68c42" +git-tree-sha1 = "97e0a9a3fa1c51ebd94dd076dd847c037b79fd79" uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" -version = "0.0.182+0" +version = "0.0.183+0" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -994,9 +994,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "f93655dc73d7a0b4a368e3c0bce296ae035ad76e" +git-tree-sha1 = "ed5e9c58612c4e081aecdb6e1a479e18462e041e" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.16" +version = "1.10.17" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] @@ -1029,9 +1029,9 @@ version = "1.29.0" [[deps.IRTools]] deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "950c3717af761bc3ff906c2e8e52bd83390b6ec2" +git-tree-sha1 = "57e9ce6cf68d0abf5cb6b3b4abf9bedf05c939c0" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.14" +version = "0.4.15" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -1213,9 +1213,9 @@ version = "4.0.1+0" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Unicode"] -git-tree-sha1 = "5e8b243b2e4c86648dac82cf767ae1456000b92d" +git-tree-sha1 = "cfedf80c59000507cc8115a0281931253f4a33cd" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "9.4.0" +version = "9.4.1" [deps.LLVM.extensions] BFloat16sExt = "BFloat16s" @@ -1225,9 +1225,9 @@ version = "9.4.0" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "f8022e2c8b5eef5f30e7fb2fe52c97cc5674db23" +git-tree-sha1 = "2ea068aac1e7f0337d381b0eae3110581e3f3216" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.36+0" +version = "0.0.37+2" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1516,9 +1516,9 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.ModelingToolkit]] deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BlockArrays", "ChainRulesCore", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "DifferentiationInterface", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "EnumX", "ExprTools", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "Moshi", "NaNMath", "NonlinearSolve", "OffsetArrays", "OrderedCollections", "OrdinaryDiffEqCore", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] -git-tree-sha1 = "2c61ddac64df1c7a629b8b222c144e9cbb064453" +git-tree-sha1 = "5a0fff843b66006da07c964ffe2dbe89b91a8dff" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "10.2.0" +version = "10.4.0" [deps.ModelingToolkit.extensions] MTKBifurcationKitExt = "BifurcationKit" @@ -1527,6 +1527,7 @@ version = "10.2.0" MTKFMIExt = "FMI" MTKInfiniteOptExt = "InfiniteOpt" MTKLabelledArraysExt = "LabelledArrays" + MTKPyomoDynamicOptExt = "Pyomo" [deps.ModelingToolkit.weakdeps] BifurcationKit = "0f109fa4-8a5d-4b75-95aa-f515264e7665" @@ -1535,6 +1536,7 @@ version = "10.2.0" FMI = "14a09403-18e3-468f-ad8a-74f8dda2d9ac" InfiniteOpt = "20393b10-9daf-11e9-18c9-8db751c92c57" LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800" + Pyomo = "0e8e1daf-01b5-4eba-a626-3897743a3816" [[deps.Moshi]] deps = ["ExproniconLite", "Jieko"] @@ -2304,9 +2306,9 @@ version = "0.1.0" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "04bbcdc8d1f7d6f667f75fbcc68728231e21fabe" +git-tree-sha1 = "a3fa02bf0ac97856e2f9129f5fb33a4b9ba0bae1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.101.0" +version = "2.102.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2359,9 +2361,9 @@ version = "1.0.0" [[deps.SciMLSensitivity]] deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "Distributions", "Enzyme", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionProperties", "FunctionWrappersWrappers", "Functors", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEqCore", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLJacobianOperators", "SciMLStructures", "StaticArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tracker", "Zygote"] -git-tree-sha1 = "1881447dcf869773898a2443008a1de9b6221ec7" +git-tree-sha1 = "d53a478dec50aba85214d48a935796bded15fa2b" uuid = "1ed8b502-d754-442c-8d5d-10ac956f44a1" -version = "7.85.0" +version = "7.86.0" [deps.SciMLSensitivity.extensions] SciMLSensitivityMooncakeExt = "Mooncake" @@ -2383,9 +2385,9 @@ version = "1.3.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +git-tree-sha1 = "9b81b8393e50b7d4e6d0a9f14e192294d3b7c109" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.1" +version = "1.3.0" [[deps.SentinelArrays]] deps = ["Dates", "Random"] @@ -2469,15 +2471,17 @@ version = "0.1.2" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "ab958b4fec46d1f1d057bb8e2a99bfdb90744646" +git-tree-sha1 = "9de43e0b9b976f1019bf7a879a686c4514520078" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.20" +version = "0.4.21" [deps.SparseMatrixColorings.extensions] + SparseMatrixColoringsCUDAExt = "CUDA" SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" [deps.SparseMatrixColorings.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" @@ -2606,9 +2610,9 @@ version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "PrettyTables", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "b6a641e38efa01355aa721246dd246e10c7dcd4d" +git-tree-sha1 = "658f6d01bfe68d6bf47915bf5d868228138c7d71" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.40" +version = "0.3.41" [[deps.SymbolicLimits]] deps = ["SymbolicUtils"] @@ -2632,9 +2636,9 @@ version = "3.29.0" [[deps.Symbolics]] deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "LaTeXStrings", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "OffsetArrays", "PrecompileTools", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "3d9551301d9ecdb8c193aac2ed0a3efc303494ca" +git-tree-sha1 = "11bb86a9b2a967b303720fd60c0bd82387915906" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "6.41.0" +version = "6.42.0" [deps.Symbolics.extensions] SymbolicsForwardDiffExt = "ForwardDiff" @@ -2762,9 +2766,9 @@ uuid = "781d530d-4396-4725-bb49-402e4bee1e77" version = "1.4.0" [[deps.URIs]] -git-tree-sha1 = "cbbebadbcc76c5ca1cc4b4f3b0614b3e603b5000" +git-tree-sha1 = "24c1c558881564e2217dcf7840a8b2e10caeb0f9" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.2" +version = "1.6.0" [[deps.UUIDs]] deps = ["Random", "SHA"] From f2d9c31602dd098d4153578025edd8f87a3042c6 Mon Sep 17 00:00:00 2001 From: Christopher Rackauckas Date: Mon, 23 Jun 2025 10:40:44 +0000 Subject: [PATCH 4/4] another bump --- .../AutomaticDifferentiation/BrussScaling.jmd | 4 +- .../AutomaticDifferentiation/Manifest.toml | 45 +++++++++++++++---- .../AutomaticDifferentiation/Project.toml | 1 + 3 files changed, 41 insertions(+), 9 deletions(-) diff --git a/benchmarks/AutomaticDifferentiation/BrussScaling.jmd b/benchmarks/AutomaticDifferentiation/BrussScaling.jmd index a043d6995..3db3b80ce 100644 --- a/benchmarks/AutomaticDifferentiation/BrussScaling.jmd +++ b/benchmarks/AutomaticDifferentiation/BrussScaling.jmd @@ -7,7 +7,7 @@ From the paper [A Comparison of Automatic Differentiation and Continuous Sensiti ```julia using OrdinaryDiffEq, ReverseDiff, ForwardDiff, FiniteDiff, SciMLSensitivity -using LinearAlgebra, Tracker, Plots +using LinearAlgebra, Tracker, Plots, Mooncake ``` ```julia @@ -300,6 +300,7 @@ _adjoint_methods = ntuple(2) do ii advj1 = Alg(autodiff=true,autojacvec=EnzymeVJP()), # AD vJ advj2 = Alg(autodiff=true,autojacvec=ReverseDiffVJP(false)), # AD vJ advj3 = Alg(autodiff=true,autojacvec=ReverseDiffVJP(true)), # AD vJ + advj4 = Alg(autodiff=true,autojacvec=MooncakeVJP()), # AD vJ ) end |> NamedTuple{(:interp, :quad)} adjoint_methods = mapreduce(collect, vcat, _adjoint_methods) @@ -326,6 +327,7 @@ plot!(plt2, n_to_param.(csan), csadata[2+3], lab="AD-Jacobian", lw=lw, marksize= plot!(plt2, n_to_param.(csan), csacompare[1+3], lab=raw"EnzymeVJP", lw=lw, marksize=ms, linestyle=:auto, marker=:auto); plot!(plt2, n_to_param.(csan), csacompare[2+3], lab=raw"ReverseDiffVJP", lw=lw, marksize=ms, linestyle=:auto, marker=:auto); plot!(plt2, n_to_param.(csan), csacompare[3+3], lab=raw"Compiled ReverseDiffVJP", lw=lw, marksize=ms, linestyle=:auto, marker=:auto); +plot!(plt2, n_to_param.(csan), csacompare[4+3], lab=raw"MooncakeVJP", lw=lw, marksize=ms, linestyle=:auto, marker=:auto); xaxis!(plt2, "Number of Parameters", :log10); yaxis!(plt2, "Runtime (s)", :log10); plot!(plt2, legend=:outertopleft, size=(1200, 600)) diff --git a/benchmarks/AutomaticDifferentiation/Manifest.toml b/benchmarks/AutomaticDifferentiation/Manifest.toml index 93c724f4d..c72ad68a7 100644 --- a/benchmarks/AutomaticDifferentiation/Manifest.toml +++ b/benchmarks/AutomaticDifferentiation/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.10.9" manifest_format = "2.0" -project_hash = "2983b00da262042be0b35f9018f9bdaee47ee5fc" +project_hash = "0e7813befa361b5f80f378028b3b230dc87d920f" [[deps.ADTypes]] git-tree-sha1 = "be7ae030256b8ef14a441726c4c37766b90b93a3" @@ -242,9 +242,9 @@ version = "1.72.5" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "1713c74e00545bfe14605d2a2be1712de8fbcb58" +git-tree-sha1 = "06ee8d1aa558d2833aa799f6f0b31b30cada405f" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.25.1" +version = "1.25.2" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -1511,6 +1511,11 @@ git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" version = "1.2.0" +[[deps.MistyClosures]] +git-tree-sha1 = "1142aefd845c608f3c70e4c202c4aae725cab67b" +uuid = "dbe65cb8-6be2-42dd-bbc5-4196aaced4f4" +version = "2.0.0" + [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" @@ -1538,6 +1543,32 @@ version = "10.4.0" LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800" Pyomo = "0e8e1daf-01b5-4eba-a626-3897743a3816" +[[deps.Mooncake]] +deps = ["ADTypes", "ChainRules", "ChainRulesCore", "DiffRules", "ExprTools", "FunctionWrappers", "GPUArraysCore", "Graphs", "InteractiveUtils", "LinearAlgebra", "MistyClosures", "Random", "Test"] +git-tree-sha1 = "243e07d3dc3842b9daa113d96c1d66981a5906b5" +uuid = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" +version = "0.4.123" + + [deps.Mooncake.extensions] + MooncakeAllocCheckExt = "AllocCheck" + MooncakeCUDAExt = "CUDA" + MooncakeFluxExt = "Flux" + MooncakeJETExt = "JET" + MooncakeLuxLibExt = "LuxLib" + MooncakeLuxLibSLEEFPiratesExtension = ["LuxLib", "SLEEFPirates"] + MooncakeNNlibExt = "NNlib" + MooncakeSpecialFunctionsExt = "SpecialFunctions" + + [deps.Mooncake.weakdeps] + AllocCheck = "9b6a8646-10ed-4001-bbdc-1d2f46dfbb1a" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" + LuxLib = "82251201-b29d-42c6-8e01-566dec8acb11" + NNlib = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" + SLEEFPirates = "476501e8-09a2-5ece-8869-fb82de89a1fa" + SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" + [[deps.Moshi]] deps = ["ExproniconLite", "Jieko"] git-tree-sha1 = "453de0fc2be3d11b9b93ca4d0fddd91196dcf1ed" @@ -2361,16 +2392,14 @@ version = "1.0.0" [[deps.SciMLSensitivity]] deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "Distributions", "Enzyme", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionProperties", "FunctionWrappersWrappers", "Functors", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEqCore", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLJacobianOperators", "SciMLStructures", "StaticArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tracker", "Zygote"] -git-tree-sha1 = "d53a478dec50aba85214d48a935796bded15fa2b" +git-tree-sha1 = "3228b1943c449d0f21b3dcd8741deff054b9ace7" uuid = "1ed8b502-d754-442c-8d5d-10ac956f44a1" -version = "7.86.0" +version = "7.86.1" +weakdeps = ["Mooncake"] [deps.SciMLSensitivity.extensions] SciMLSensitivityMooncakeExt = "Mooncake" - [deps.SciMLSensitivity.weakdeps] - Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" - [[deps.SciMLStructures]] deps = ["ArrayInterface"] git-tree-sha1 = "566c4ed301ccb2a44cbd5a27da5f885e0ed1d5df" diff --git a/benchmarks/AutomaticDifferentiation/Project.toml b/benchmarks/AutomaticDifferentiation/Project.toml index 71a72828a..0252b7468 100644 --- a/benchmarks/AutomaticDifferentiation/Project.toml +++ b/benchmarks/AutomaticDifferentiation/Project.toml @@ -9,6 +9,7 @@ FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" Markdown = "d6f4376e-aef5-505a-96c1-9c027394607a" +Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" ParameterizedFunctions = "65888b18-ceab-5e60-b2b9-181511a3b968" Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"