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Dataset and demo video update
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README.md

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A minimal/example hugo site for node pathogens portal, it uses a [theme](https://github.com/ScilifelabDataCentre/node-pathogens-portal-theme) inspired by [Swedish pathogen portal](https://www.pathogens.se/) and [Swiss pathogen portal](https://pathogensportal.ch/), while following the visual identity of [central pathogens portal](https://www.pathogensportal.org/).
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More information about Pathogen Portal Nodes (PPN) and Pathogen Data Network (PDN) can be found in this [Onboarding material](static/docs/Onboarding_Introduction.pdf)
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## Content
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- [Requirements](#requirements)
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The following steps are for a quick setup/starting guide, `Hugo` should have been installed (link mentioned above) in your computer before following the below mentioned steps.
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1) Fork this repository to your own github organisation, if desired you can use different name for the repository while forking. More information on how to do that can be found [here](https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/working-with-forks/fork-a-repo) or watch the [demo video](https://youtu.be/Ycq1HamGa9I).
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1) Fork this repository to your own github organisation, if desired you can use different name for the repository while forking. More information on how to do that can be found [here](https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/working-with-forks/fork-a-repo) or watch the [demo video](https://youtu.be/v53tevQV-7I).
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2) Clone the forked repository to your computer using the following command in a terminal ([demo video](https://youtu.be/Y53Cny4LHNo))
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2) Clone the forked repository to your computer using the following command in a terminal ([demo video](https://youtu.be/671ij1kB2EU))
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```
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git clone --recursive <your fork url>
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cd <repository name>
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```
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4) Start `hugo` and see if works as expected ([demo video](https://youtu.be/6lJ43sGCPzY))
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4) Start `hugo` and see if works as expected ([demo video](https://youtu.be/L4cLXx90dJI))
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```
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hugo serve

content/about.md

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## About
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The Pathogens Portal is a platform for sharing data and analysis results on infectious diseases. The portal is designed to be a regional hub for researchers, public health officials, and the general public to access and share data on infectious diseases.
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The Pathogens Portal is a platform for sharing data and analysis results on infectious diseases. The portal is designed to be a regional hub for researchers, public health officials, and the general public to access and share data on infectious diseases.
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The Pathogen Portal Nodes(PPN) will be a part of the <a target="_blank" href="https://pathogendatanetwork.org/">Pathogen Data Network</a> working in collaboration with <a target="_blank" href="https://www.pathogensportal.org/">Central Pathogens Portal</a>.
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The Pathogen Portal Nodes(PPN) will be a part of the <a target="_blank" href="https://pathogendatanetwork.org/">Pathogen Data Network</a> (PDN) working in collaboration with <a target="_blank" href="https://www.pathogensportal.org/">Central Pathogens Portal</a>. For more information about PPN and PDN checkout this <a href="/docs/Onboarding_Introduction.pdf">onboarding material</a>.

content/datasets/_index.md

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identifier: datasets
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weight: 3
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---
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<div class="bg-light-gray border rounded py-2 px-4 my-3 fst-italic" style="background-color: #E5E5E5;">
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NOTE: Software components to link Central Pathogens Portal data to Pathogen Portal Nodes is under development, and will be accessible under this section of the portal.
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</div>
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Data and publications produced by national researchers can be listed/highlighted here. Refer to <a target="_blank" href="https://pathogensportal.ch/access-data/datasets/">Swiss pathogens portal datasets</a> or <a target="_blank" href="https://www.pathogens.se/datasets/all/">Swedish pathogens portal datasets</a>.
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**Note:** Below it displays query links for Sweden, which was set as node country in config file as an example.

hugo.yaml

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images:
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- /img/pathogens_logo.svg
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# local node info, logo will be displayed above pathogens logo
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# given 'node_country' is an example, change the value to actual country
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node_logo: "/img/example_logo.png"
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node_url: "https://example.com/"
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node_country: "Sweden"
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