REL: Release 1.2.1 (#406)

### Major Updates and Feature Improvements
- None

### Changes to API
- None

### Bug Fixes and Other Changes
- Fixes issues with dependencies
	- Adds flask to dependencies.
- Fixes missing file in the python package
- Clarifies help string for show-wsi option


### Development related changes
- Removes Travis CI
	- GitHub Actions will be used instead.
- Adds pre-commit hooks to check requirements consistency.
- Adds GitHub Action to resolve conda environment checks on Windows and Ubuntu.

Author: shaneahmed

.github/workflows/conda-env-create.yml

@@ -0,0 +1,35 @@
+# This workflow will build a conda environment to check that it resolves in a reasonable time
+
+name: Solve Conda Environment
+
+on:
+  push:
+    paths: [ "requirements*.yml", "conda-env-create.yml" ]
+  pull_request:
+    paths: [ "requirements*.yml", "conda-env-create.yml" ]
+  schedule: # Run on the 1st of every month at midnight
+    - cron: "0 0 1 * *"
+
+jobs:
+  conda_solve:
+    strategy:
+      fail-fast: true
+      matrix:
+        os: [ubuntu-latest, windows-latest]
+        include:
+          - os: ubuntu-latest
+            requirements: requirements.conda.yml
+          - os: windows-latest
+            requirements: requirements.win64.conda.yml
+    runs-on: ${{ matrix.os }}
+    timeout-minutes: 20
+    steps:
+      - uses: actions/checkout@v2
+      - uses: mamba-org/provision-with-micromamba@main
+        with:
+          environment-name: tiatoolbox
+          environment-file: ${{ matrix.requirements }}
+      - shell: bash -l {0}
+        run: |
+          micromamba info
+          micromamba list

.pre-commit-config.yaml

@@ -71,3 +71,12 @@ repos:
         files: tests/.*\btest_\w*.py
         language: system
         stages: [push]
+  - repo: local
+    hooks:
+      - id: requirements-consistency
+        name: check requirements are consistent
+        entry: python pre-commit/requirements_consistency.py
+        files: "(requirements.*.(txt|yml|yaml)|setup.py)$"
+        pass_filenames: false
+        language: python
+        additional_dependencies: [pyyaml]

.travis.yml

@@ -44,9 +44,9 @@ authors:
   given-names: "Shan E Ahmed"
   orcid: "https://orcid.org/0000-0002-1097-1738"
 title: "TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics"
-version: 1.2.0
+version: 1.2.1
 doi: 10.5281/zenodo.5802442
-date-released: 2022-07-05
+date-released: 2022-07-07
 url: "https://github.com/TissueImageAnalytics/tiatoolbox"
 preferred-citation:
   type: article

CITATION.cff

@@ -1,6 +1,28 @@
 History
 =======
 
+1.2.1 (2022-07-07)
+------------------
+### Major Updates and Feature Improvements
+- None
+
+### Changes to API
+- None
+
+### Bug Fixes and Other Changes
+- Fixes issues with dependencies.
+	- Adds flask to dependencies.
+- Fixes missing file in the python package.
+- Clarifies help string for show-wsi option.
+
+
+### Development related changes
+- Removes Travis CI.
+	- GitHub Actions will be used instead.
+- Adds pre-commit hooks to check requirements consistency.
+- Adds GitHub Action to resolve conda environment checks on Windows and Ubuntu.
+
+
 1.2.0 (2022-07-05)
 ------------------
 ### Major Updates and Feature Improvements

HISTORY.md

@@ -3,13 +3,13 @@ include CONTRIBUTING.rst
 include HISTORY.md
 include LICENSE
 include README.md
-include tiatoolbox/data/*
 include make.bat
 include Makefile
 include conf.py
 
 recursive-include tests *
 recursive-include docs
+recursive-include tiatoolbox/data *
 
 recursive-exclude * __pycache__
 recursive-exclude * *.py[co]