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[pre-commit.ci] auto fixes from pre-commit.com hooks
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+6
-8
lines changed

3 files changed

+6
-8
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tests/test_wsireader.py

Lines changed: 4 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -13,10 +13,10 @@
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from unittest.mock import patch
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import cv2
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import tifffile
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import glymur
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import numpy as np
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import pytest
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import tifffile
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import zarr
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from click.testing import CliRunner
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from packaging.version import Version
@@ -735,20 +735,18 @@ def test_is_tiled_tiff(source_image: Path) -> None:
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assert wsireader.is_tiled_tiff(source_image.with_suffix(".tiff")) is False
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source_image.with_suffix(".tiff").replace(source_image)
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def test_is_not_tiled_tiff(tmp_samples_path: Path) -> None:
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"""Test if source_image is not a tiled tiff."""
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temp_tiff_path = tmp_samples_path / "not_tiled.tiff"
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images = [np.random.randint(0, 256, (4, 4), dtype=np.uint8) for _ in range(3)]
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# Write multi-page TIFF with all pages not tiled
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with tifffile.TiffWriter(temp_tiff_path) as tif:
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for image in images:
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tif.write(
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image,
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compression=None,
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tile=None
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)
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tif.write(image, compression=None, tile=None)
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assert wsireader.is_tiled_tiff(temp_tiff_path) is False
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def test_read_rect_openslide_levels(sample_ndpi: Path) -> None:
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"""Test openslide read rect with resolution in levels.
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tiatoolbox/wsicore/metadata/ngff.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -11,7 +11,7 @@
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from typing import TYPE_CHECKING, Literal
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if TYPE_CHECKING: # pragma: no cover
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if TYPE_CHECKING: # pragma: no cover
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from collections.abc import Iterator
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from dataclasses import dataclass, field

tiatoolbox/wsicore/wsireader.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -6144,4 +6144,4 @@ class docstrings for more information.
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base_region = Image.alpha_composite(base_region, im_region)
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base_region = base_region.convert("RGB")
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return np.array(base_region)
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return utils.transforms.background_composite(im_region, alpha=False)
6147+
return utils.transforms.background_composite(im_region, alpha=False)

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