🔖 REL: Release 1.3.3 (#552)

## 1.3.3 (2023-03-02)

### Major Updates and Feature Improvements

- Restricts dependency versions for long term stability of the current version

### Changes to API

None

### Bug Fixes and Other Changes

- Fix bug related to reading scikit-image

### Development related changes

- Restricts dependency versions for compatibility

Author: shaneahmed

.github/workflows/docker-publish.yml

@@ -6,7 +6,7 @@ env:
   REGISTRY: ghcr.io
   IMAGE_NAME: TissueImageAnalytics/tiatoolbox
   image: ghcr.io/tissueimageanalytics/tiatoolbox
-  TOOLBOX_VER: 1.3.2
+  TOOLBOX_VER: 1.3.3
 
 jobs:
   build-and-push-image:

CITATION.cff

@@ -44,7 +44,7 @@ authors:
   given-names: "Shan E Ahmed"
   orcid: "https://orcid.org/0000-0002-1097-1738"
 title: "TIAToolbox as an end-to-end library for advanced tissue image analytics"
-version: 1.3.2  # TIAToolbox version
+version: 1.3.3  # TIAToolbox version
 doi: 10.5281/zenodo.5802442
 date-released: 2022-10-20
 url: "https://github.com/TissueImageAnalytics/tiatoolbox"

HISTORY.md

@@ -1,5 +1,24 @@
 # History
 
+## 1.3.3 (2023-03-02)
+
+### Major Updates and Feature Improvements
+
+- Restricts dependency versions for long term stability of the current version
+
+### Changes to API
+
+None
+
+### Bug Fixes and Other Changes
+
+- Fix bug related to reading scikit-image
+
+### Development related changes
+
+- Restricts dependency versions for compatibility
+
+
 ## 1.3.2 (2023-02-17)
 
 ### Major Updates and Feature Improvements

requirements.txt

@@ -1,31 +1,31 @@
 # torch installation
 --extra-index-url https://download.pytorch.org/whl/cu116; sys_platform != "darwin"
-albumentations>=1.3.0
-Click>=8.1.3
-defusedxml>=0.7.1
-flask>=2.2.2
-glymur>=0.11.7
-imagecodecs>=2021.11.20
-jupyterlab>=3.4.8
-matplotlib>=3.5.3
-numpy>=1.21.6, <1.24
-opencv-python>=4.6.0
-openslide-python>=1.2.0
-pandas>=1.3.5
-pillow>=9.2.0
-pydicom>=2.3.0 # Used by wsidicom
-pyyaml>=6.0
-requests>=2.28.1
-scikit-image>=0.19.3
-scikit-learn>=1.0.2
-scipy>=1.7.3
+albumentations>=1.2.0, <=1.3.0
+Click>=8.1.0, <=8.1.3
+defusedxml>=0.6.0, <=0.7.1
+flask>=2.2.2, <=2.2.3
+glymur>=0.11.7, <=0.12.2
+imagecodecs>=2021.11.20, <=2023.1.23
+jupyterlab>=3.4.8, <=3.6.1
+matplotlib>=3.5.3, <=3.7.0
+numpy>=1.21.6, <=1.23.5
+opencv-python>=4.6.0, <=4.7.0
+openslide-python>=1.1.2, <=1.2.0
+pandas>=1.3.5, <=1.5.3
+pillow>=9.2.0, <=9.4.0
+pydicom>=2.3.0, <=2.3.1 # Used by wsidicom
+pyyaml>=5.4, <=6.0
+requests>=2.28.1, <=2.28.2
+scikit-image>=0.19.0, <=0.19.3
+scikit-learn>=1.0.2, <=1.2.1
+scipy>=1.7.3, <=1.10.1
 shapely>=1.8.5, <2.0.0 # Remove 2.0.0 once AnnotationStore is compatible
-SimpleITK>=2.1.1
-sphinx>=4.3.2
-tifffile>=2021.11.2
-torch>=1.13.0
-torchvision>=0.13.0
-tqdm>=4.64.1
-umap-learn>=0.5.3
+SimpleITK>=2.1.1, <=2.2.1
+sphinx>=4.3.2, <=6.1.3
+tifffile>=2021.11.2, <=2023.2.28
+torch>=1.13.0, <=1.13.1
+torchvision>=0.13.0, <=0.14.1
+tqdm>=4.63.0, <=4.64.1
+umap-learn>=0.5.0, <0.5.3
 wsidicom>=0.3.2, <0.7.0
-zarr>=2.12.0
+zarr>=2.12.0, <=2.14.2

setup.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 1.3.2
+current_version = 1.3.3
 commit = True
 tag = False
 

setup.py

@@ -63,6 +63,6 @@
     test_suite="tests",
     tests_require=test_requirements,
     url="https://github.com/TissueImageAnalytics/tiatoolbox",
-    version="1.3.2",
+    version="1.3.3",
     zip_safe=False,
 )

tiatoolbox/__init__.py

@@ -10,7 +10,7 @@
 
 __author__ = """TIA Lab"""
 __email__ = "tialab@dcs.warwick.ac.uk"
-__version__ = "1.3.2"
+__version__ = "1.3.3"
 
 # This will set the tiatoolbox external data
 # default to be the user home folder, should work on both Window and Unix/Linux