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stiber opened this issue Mar 14, 2025 · 2 comments
Open

Something about serialization/deserialization is broken #819

stiber opened this issue Mar 14, 2025 · 2 comments
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@stiber
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stiber commented Mar 14, 2025

We (@varndorfer and @stiber) are pretty sure that deserialized synapses don't work. In a growth continuation of one of the large growth simulations, only the endogenously active neurons appear to be spiking.

@stiber stiber added bug Something isn't working urgent labels Mar 14, 2025
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stiber commented Mar 14, 2025

Note that in v0.9.3, which only serializes the synapse information, we are able to deserialize working synapses.

@varndorfer
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The serialization file outputs the AllEdges.destinationVertices vector as all zeros. I wrote a hack to output the destVertexIndex_ vector in AllSynapsesDeviceFuncs_d.cpp at the end of a simulation and that was also all zero. The problem may be in AllSynapsesDeviceFuncs_d.cpp and not serialization

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