update version string; revert to clearing both target and decoy protein vectors in StorePeptide()

Author: jke000

CometSearch/CometSearch.cpp

@@ -4732,10 +4732,8 @@ void CometSearch::StorePeptide(int iWhichQuery,
       pTmp.cPrevAA = pQuery->_pResults[siLowestXcorrScoreIndex].cPrevAA;
       pTmp.cNextAA = pQuery->_pResults[siLowestXcorrScoreIndex].cNextAA;
 
-      if (bDecoyPep)   //OK JKE check if this change is correct
-         pQuery->_pResults[siLowestXcorrScoreIndex].pWhichDecoyProtein.clear();
-      else
-         pQuery->_pResults[siLowestXcorrScoreIndex].pWhichProtein.clear();
+      pQuery->_pResults[siLowestXcorrScoreIndex].pWhichDecoyProtein.clear();
+      pQuery->_pResults[siLowestXcorrScoreIndex].pWhichProtein.clear();
       pQuery->_pResults[siLowestXcorrScoreIndex].lProteinFilePosition = dbe->lProteinFilePosition;
 
       if (bDecoyPep)

CometSearch/Common.h

@@ -70,7 +70,7 @@ using namespace std;
    #define GITHUBSHA ""
 #endif
 
-#define comet_version   "2025.01 rev. 0"
+#define comet_version   "2025.01 rev. 1"
 #define copyright "(c) University of Washington"
 extern string g_sCometVersion;   // version string including git hash