Skip to content

aes_() deprecation #655

@willgearty

Description

@willgearty

The aes_() function has been deprecated in ggplot2 since version 3.0.0. Please remove uses of it from ggtree. See reprex below:

library(ggplot2)
library(ggtree)
#> ggtree v3.14.0 Learn more at https://yulab-smu.top/contribution-tree-data/
#> 
#> Please cite:
#> 
#> Guangchuang Yu, Tommy Tsan-Yuk Lam, Huachen Zhu, Yi Guan. Two methods
#> for mapping and visualizing associated data on phylogeny using ggtree.
#> Molecular Biology and Evolution. 2018, 35(12):3041-3043.
#> doi:10.1093/molbev/msy194
set.seed(1)
tree <- rtree(100)
ggtree(tree)
#> Warning: `aes_()` was deprecated in ggplot2 3.0.0.
#> ℹ Please use tidy evaluation idioms with `aes()`
#> ℹ The deprecated feature was likely used in the ggtree package.
#>   Please report the issue at <https://github.com/YuLab-SMU/ggtree/issues>.
#> This warning is displayed once every 8 hours.
#> Call `lifecycle::last_lifecycle_warnings()` to see where this warning was
#> generated.
#> Warning in fortify(data, ...): Arguments in `...` must be used.
#> ✖ Problematic arguments:
#> • as.Date = as.Date
#> • yscale_mapping = yscale_mapping
#> • hang = hang
#> ℹ Did you misspell an argument name?

Created on 2025-06-17 with reprex v2.1.1

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions