geom_tiplab(geom = "image") is broken #679
Description
Some recent change has broken geom_tiplab when using geom="image".
Here it is working in an older version of ggtree (v3.17.1.001, cdd5401):
library(ggimage)
#> Loading required package: ggplot2
library(ggtree)
#> ggtree v3.17.1.001 Learn more at https://yulab-smu.top/contribution-tree-data/
#>
#> Please cite:
#>
#> Guangchuang Yu, Tommy Tsan-Yuk Lam, Huachen Zhu, Yi Guan. Two methods
#> for mapping and visualizing associated data on phylogeny using ggtree.
#> Molecular Biology and Evolution. 2018, 35(12):3041-3043.
#> doi:10.1093/molbev/msy194
library(TDbook)
nwk <- paste0("((((bufonidae, dendrobatidae), ceratophryidae),",
"(centrolenidae, leptodactylidae)), hylidae);")
imgdir <- system.file("extdata/frogs", package = "TDbook")
x = read.tree(text = nwk)
dat <- tibble::tibble(
tip = "bufonidae",
image = paste0(imgdir, "/bufonidae.jpg")
)
ggtree(x) %<+%
dat +
geom_tiplab(aes(image = image), geom = "image")
#> Warning: `aes_()` was deprecated in ggplot2 3.0.0.
#> ℹ Please use tidy evaluation idioms with `aes()`
#> ℹ The deprecated feature was likely used in the ggtree package.
#> Please report the issue at <https://github.com/YuLab-SMU/ggtree/issues>.
#> This warning is displayed once every 8 hours.
#> Call `lifecycle::last_lifecycle_warnings()` to see where this warning was
#> generated.
#> Warning in fortify(data, ...): Arguments in `...` must be used.
#> ✖ Problematic arguments:
#> • as.Date = as.Date
#> • yscale_mapping = yscale_mapping
#> • branch.length = branch.length
#> • hang = hang
#> ℹ Did you misspell an argument name?
#> Warning: `aes_string()` was deprecated in ggplot2 3.0.0.
#> ℹ Please use tidy evaluation idioms with `aes()`.
#> ℹ See also `vignette("ggplot2-in-packages")` for more information.
#> ℹ The deprecated feature was likely used in the ggtree package.
#> Please report the issue at <https://github.com/YuLab-SMU/ggtree/issues>.
#> This warning is displayed once every 8 hours.
#> Call `lifecycle::last_lifecycle_warnings()` to see where this warning was
#> generated.
#> Warning: Removed 5 rows containing missing values or values outside the scale range
#> (`geom_image()`).
Created on 2025-10-31 with reprex v2.1.1
Session info
sessioninfo::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#> setting value
#> version R version 4.5.0 (2025-04-11)
#> os macOS Sonoma 14.6.1
#> system aarch64, darwin20
#> ui X11
#> language (EN)
#> collate en_US.UTF-8
#> ctype en_US.UTF-8
#> tz Asia/Tokyo
#> date 2025-10-31
#> pandoc 3.1.2 @ /usr/local/bin/ (via rmarkdown)
#> quarto 1.6.39 @ /Applications/quarto/bin/quarto
#>
#> ─ Packages ───────────────────────────────────────────────────────────────────
#> package * version date (UTC) lib source
#> ape 5.8-1 2024-12-16 [1] CRAN (R 4.5.0)
#> aplot 0.2.8 2025-07-02 [1] CRAN (R 4.5.0)
#> cli 3.6.5 2025-04-23 [1] CRAN (R 4.5.0)
#> crayon 1.5.3 2024-06-20 [1] CRAN (R 4.5.0)
#> curl 7.0.0 2025-08-19 [1] CRAN (R 4.5.0)
#> digest 0.6.37 2024-08-19 [1] CRAN (R 4.5.0)
#> dplyr 1.1.4 2023-11-17 [1] CRAN (R 4.5.0)
#> evaluate 1.0.3 2025-01-10 [1] CRAN (R 4.5.0)
#> farver 2.1.2 2024-05-13 [1] CRAN (R 4.5.0)
#> fastmap 1.2.0 2024-05-15 [1] CRAN (R 4.5.0)
#> fs 1.6.6 2025-04-12 [1] CRAN (R 4.5.0)
#> generics 0.1.4 2025-05-09 [1] CRAN (R 4.5.0)
#> ggfun 0.2.0 2025-07-15 [1] CRAN (R 4.5.0)
#> ggimage * 0.3.3 2023-06-19 [1] CRAN (R 4.5.0)
#> ggplot2 * 4.0.0 2025-09-11 [1] CRAN (R 4.5.0)
#> ggplotify 0.1.2 2023-08-09 [1] CRAN (R 4.5.0)
#> ggtree * 3.17.1.001 2025-10-31 [1] Github (YuLab-SMU/ggtree@cdd5401)
#> glue 1.8.0 2024-09-30 [1] CRAN (R 4.5.0)
#> gridGraphics 0.5-1 2020-12-13 [1] CRAN (R 4.5.0)
#> gtable 0.3.6 2024-10-25 [1] CRAN (R 4.5.0)
#> htmltools 0.5.8.1 2024-04-04 [1] CRAN (R 4.5.0)
#> jsonlite 2.0.0 2025-03-27 [1] CRAN (R 4.5.0)
#> knitr 1.50 2025-03-16 [1] CRAN (R 4.5.0)
#> labeling 0.4.3 2023-08-29 [1] CRAN (R 4.5.0)
#> lattice 0.22-6 2024-03-20 [1] CRAN (R 4.5.0)
#> lazyeval 0.2.2 2019-03-15 [1] CRAN (R 4.5.0)
#> lifecycle 1.0.4 2023-11-07 [1] CRAN (R 4.5.0)
#> magick 2.8.7 2025-06-06 [1] CRAN (R 4.5.0)
#> magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.5.0)
#> nlme 3.1-168 2025-03-31 [1] CRAN (R 4.5.0)
#> patchwork 1.3.1 2025-06-21 [1] CRAN (R 4.5.0)
#> pillar 1.11.0 2025-07-04 [1] CRAN (R 4.5.0)
#> pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.5.0)
#> purrr 1.1.0 2025-07-10 [1] CRAN (R 4.5.0)
#> R6 2.6.1 2025-02-15 [1] CRAN (R 4.5.0)
#> RColorBrewer 1.1-3 2022-04-03 [1] CRAN (R 4.5.0)
#> Rcpp 1.1.0 2025-07-02 [1] CRAN (R 4.5.0)
#> reprex 2.1.1 2024-07-06 [1] CRAN (R 4.5.0)
#> rlang 1.1.6 2025-04-11 [1] CRAN (R 4.5.0)
#> rmarkdown 2.29 2024-11-04 [1] CRAN (R 4.5.0)
#> S7 0.2.0 2024-11-07 [1] CRAN (R 4.5.0)
#> scales 1.4.0 2025-04-24 [1] CRAN (R 4.5.0)
#> sessioninfo 1.2.3 2025-02-05 [1] CRAN (R 4.5.0)
#> TDbook * 0.0.6 2022-08-13 [1] CRAN (R 4.5.0)
#> tibble 3.3.0 2025-06-08 [1] CRAN (R 4.5.0)
#> tidyr 1.3.1 2024-01-24 [1] CRAN (R 4.5.0)
#> tidyselect 1.2.1 2024-03-11 [1] CRAN (R 4.5.0)
#> tidytree 0.4.6 2023-12-12 [1] CRAN (R 4.5.0)
#> treeio 1.32.0 2025-04-15 [1] Bioconduc~
#> vctrs 0.6.5 2023-12-01 [1] CRAN (R 4.5.0)
#> withr 3.0.2 2024-10-28 [1] CRAN (R 4.5.0)
#> xfun 0.52 2025-04-02 [1] CRAN (R 4.5.0)
#> xml2 1.3.8 2025-03-14 [1] CRAN (R 4.5.0)
#> yaml 2.3.10 2024-07-26 [1] CRAN (R 4.5.0)
#> yulab.utils 0.2.0 2025-01-29 [1] CRAN (R 4.5.0)
#>
#> [1] /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library
#> * ── Packages attached to the search path.
#>
#> ──────────────────────────────────────────────────────────────────────────────But in the most recent commit (v4.1.1, 57a3e6b), the same code fails:
library(ggimage)
#> Loading required package: ggplot2
library(ggtree)
#> ggtree v4.1.1 Learn more at https://yulab-smu.top/contribution-tree-data/
#>
#> Please cite:
#>
#> Guangchuang Yu, David Smith, Huachen Zhu, Yi Guan, Tommy Tsan-Yuk Lam.
#> ggtree: an R package for visualization and annotation of phylogenetic
#> trees with their covariates and other associated data. Methods in
#> Ecology and Evolution. 2017, 8(1):28-36. doi:10.1111/2041-210X.12628
library(TDbook)
nwk <- paste0("((((bufonidae, dendrobatidae), ceratophryidae),",
"(centrolenidae, leptodactylidae)), hylidae);")
imgdir <- system.file("extdata/frogs", package = "TDbook")
x = read.tree(text = nwk)
dat <- tibble::tibble(
tip = "bufonidae",
image = paste0(imgdir, "/bufonidae.jpg")
)
ggtree(x) %<+%
dat +
geom_tiplab(aes(image = image), geom = "image")
#> Error in get(x, envir = ns, inherits = FALSE): object 'geom_image_interactive' not foundCreated on 2025-10-31 with reprex v2.1.1
Session info
sessioninfo::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#> setting value
#> version R version 4.5.0 (2025-04-11)
#> os macOS Sonoma 14.6.1
#> system aarch64, darwin20
#> ui X11
#> language (EN)
#> collate en_US.UTF-8
#> ctype en_US.UTF-8
#> tz Asia/Tokyo
#> date 2025-10-31
#> pandoc 3.1.2 @ /usr/local/bin/ (via rmarkdown)
#> quarto 1.6.39 @ /Applications/quarto/bin/quarto
#>
#> ─ Packages ───────────────────────────────────────────────────────────────────
#> package * version date (UTC) lib source
#> ape 5.8-1 2024-12-16 [1] CRAN (R 4.5.0)
#> aplot 0.2.8 2025-07-02 [1] CRAN (R 4.5.0)
#> cli 3.6.5 2025-04-23 [1] CRAN (R 4.5.0)
#> digest 0.6.37 2024-08-19 [1] CRAN (R 4.5.0)
#> dplyr 1.1.4 2023-11-17 [1] CRAN (R 4.5.0)
#> evaluate 1.0.3 2025-01-10 [1] CRAN (R 4.5.0)
#> farver 2.1.2 2024-05-13 [1] CRAN (R 4.5.0)
#> fastmap 1.2.0 2024-05-15 [1] CRAN (R 4.5.0)
#> fontBitstreamVera 0.1.1 2017-02-01 [1] CRAN (R 4.5.0)
#> fontLiberation 0.1.0 2016-10-15 [1] CRAN (R 4.5.0)
#> fontquiver 0.2.1 2017-02-01 [1] CRAN (R 4.5.0)
#> fs 1.6.6 2025-04-12 [1] CRAN (R 4.5.0)
#> gdtools 0.4.4 2025-10-06 [1] CRAN (R 4.5.0)
#> generics 0.1.4 2025-05-09 [1] CRAN (R 4.5.0)
#> ggfun 0.2.0 2025-07-15 [1] CRAN (R 4.5.0)
#> ggimage * 0.3.3 2023-06-19 [1] CRAN (R 4.5.0)
#> ggiraph 0.9.2 2025-10-07 [1] CRAN (R 4.5.0)
#> ggplot2 * 4.0.0 2025-09-11 [1] CRAN (R 4.5.0)
#> ggplotify 0.1.2 2023-08-09 [1] CRAN (R 4.5.0)
#> ggtree * 4.1.1 2025-10-31 [1] Github (YuLab-SMU/ggtree@57a3e6b)
#> glue 1.8.0 2024-09-30 [1] CRAN (R 4.5.0)
#> gridGraphics 0.5-1 2020-12-13 [1] CRAN (R 4.5.0)
#> gtable 0.3.6 2024-10-25 [1] CRAN (R 4.5.0)
#> htmltools 0.5.8.1 2024-04-04 [1] CRAN (R 4.5.0)
#> htmlwidgets 1.6.4 2023-12-06 [1] CRAN (R 4.5.0)
#> jsonlite 2.0.0 2025-03-27 [1] CRAN (R 4.5.0)
#> knitr 1.50 2025-03-16 [1] CRAN (R 4.5.0)
#> lattice 0.22-6 2024-03-20 [1] CRAN (R 4.5.0)
#> lazyeval 0.2.2 2019-03-15 [1] CRAN (R 4.5.0)
#> lifecycle 1.0.4 2023-11-07 [1] CRAN (R 4.5.0)
#> magick 2.8.7 2025-06-06 [1] CRAN (R 4.5.0)
#> magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.5.0)
#> nlme 3.1-168 2025-03-31 [1] CRAN (R 4.5.0)
#> patchwork 1.3.1 2025-06-21 [1] CRAN (R 4.5.0)
#> pillar 1.11.0 2025-07-04 [1] CRAN (R 4.5.0)
#> pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.5.0)
#> purrr 1.1.0 2025-07-10 [1] CRAN (R 4.5.0)
#> R6 2.6.1 2025-02-15 [1] CRAN (R 4.5.0)
#> RColorBrewer 1.1-3 2022-04-03 [1] CRAN (R 4.5.0)
#> Rcpp 1.1.0 2025-07-02 [1] CRAN (R 4.5.0)
#> reprex 2.1.1 2024-07-06 [1] CRAN (R 4.5.0)
#> rlang 1.1.6 2025-04-11 [1] CRAN (R 4.5.0)
#> rmarkdown 2.29 2024-11-04 [1] CRAN (R 4.5.0)
#> S7 0.2.0 2024-11-07 [1] CRAN (R 4.5.0)
#> scales 1.4.0 2025-04-24 [1] CRAN (R 4.5.0)
#> sessioninfo 1.2.3 2025-02-05 [1] CRAN (R 4.5.0)
#> systemfonts 1.3.1 2025-10-01 [1] CRAN (R 4.5.0)
#> TDbook * 0.0.6 2022-08-13 [1] CRAN (R 4.5.0)
#> tibble 3.3.0 2025-06-08 [1] CRAN (R 4.5.0)
#> tidyr 1.3.1 2024-01-24 [1] CRAN (R 4.5.0)
#> tidyselect 1.2.1 2024-03-11 [1] CRAN (R 4.5.0)
#> tidytree 0.4.6 2023-12-12 [1] CRAN (R 4.5.0)
#> treeio 1.32.0 2025-04-15 [1] Bioconduc~
#> vctrs 0.6.5 2023-12-01 [1] CRAN (R 4.5.0)
#> withr 3.0.2 2024-10-28 [1] CRAN (R 4.5.0)
#> xfun 0.52 2025-04-02 [1] CRAN (R 4.5.0)
#> yaml 2.3.10 2024-07-26 [1] CRAN (R 4.5.0)
#> yulab.utils 0.2.0 2025-01-29 [1] CRAN (R 4.5.0)
#>
#> [1] /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library
#> * ── Packages attached to the search path.
#>
#> ──────────────────────────────────────────────────────────────────────────────