pymatgen integration

[janosh]

This looks like a really nice project! We're having some trouble with installing and running the original Fortran implementation of bader (not M1 Mac compatible) over at materialsproject/pymatgen#3191.

We're looking into switching to pybader instead. Just wanted to check what the long-term development plans for pybader are and if you'd be interested in a PR to add some tests.

I also noticed you started the process of creating python bindings for bader-rs in 2021. Is that still on the table?

[adam-kerrigan]

Hi Janosh,

The long-term plans are to have pybader be bindings of bader-rs. I gave up on the "pure" python implementation when I was trying to adapt the weight method for multi-threading. Now that I've done this I'm quite happy with the speed (even when not threaded) and ability to add more robust critical point detection. The way I see it working is:

• send lattice, atoms and density to bader-rs
• get a map of voxel -> atom, charge & volume (& spin) of each atom, list of critical points
• further analysis of critical points and oxidation etc done in python

I'd like to totally drop the binary from bader-rs but I'm still unsure on this as I also like the idea of having the binary in rust and leave the python for just scripting, in which case the I/O and entry points from pybader will be gone.