scMET/NAMESPACE at master · andreaskapou/scMET · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
# Generated by roxygen2: do not edit by hand

export(bb_mle)
export(create_design_matrix)
export(sce_to_scmet)
export(scmet)
export(scmet_differential)
export(scmet_hvf)
export(scmet_lvf)
export(scmet_plot_efdr_efnr_grid)
export(scmet_plot_estimated_vs_true)
export(scmet_plot_ma)
export(scmet_plot_mean_var)
export(scmet_plot_vf_tail_prob)
export(scmet_plot_volcano)
export(scmet_simulate)
export(scmet_simulate_diff)
export(scmet_to_sce)
import(BiocStyle)
import(Rcpp)
import(data.table)
import(methods)
import(rstantools)
importFrom(RcppParallel,CxxFlags)
importFrom(RcppParallel,RcppParallelLibs)
importFrom(S4Vectors,metadata)
importFrom(VGAM,Coef)
importFrom(VGAM,betabinomial)
importFrom(VGAM,dbetabinom.ab)
importFrom(VGAM,vglm)
importFrom(cowplot,plot_grid)
importFrom(data.table,":=")

importFrom(dplyr,count)
importFrom(logitnorm,rlogitnorm)
importFrom(rstan,sampling)
importFrom(rstan,vb)
importFrom(stats,qlogis)
useDynLib(scMET, .registration = TRUE)