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changelog.md

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### New components
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- `card_rgi`: Anti-microbial gene screening for assemblies
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- `filter_poly`: Runs PrinSeq on paired-end FastQ files to remove low complexity sequences
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- `kraken`: Taxonomical identification of FastQ files
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- `megahit`: Metagenomic assembler for paired-end FastQ files
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- `metaprob`: Preforms read binning on metagenomic FastQ files
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- `metamlst`: Checks the Sequence Type of metagenomic FastQ reads using Multilocus Sequence Typing
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- `metaspades`: Metagenomic assembler for paired-end FastQ files
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- `midas_species`: Taxonomical identification of FastQ files on the species level
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- `remove host`: Read mapping with Bowtie2 against the host genome (default hg19) and removes the mapping reads
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- `sistr`: Salmonella *in silico* typing component for assemblies.
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### Features
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- The `env` scope of nextflow.config now extends the `PYTHONPATH`
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environmental variable.
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- Updated indexes for both `mapping_patlas` and `mash` based processes.
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- New logo!
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# Bug Fixes
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- **Template: fastqc_report.py**: Added fix to trim range evaluation.
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- **Script: merge_json.py**: Fixed chewbbaca JSON merge function.
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- **Script: merge_json.py**: Fixed chewbbaca JSON merge function.

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