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lines changed Original file line number Diff line number Diff line change 7
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- Added new ` recipe ` system to flowcraft along with 6 starting recipes.
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Recipes are pre-made and curated pipelines that address specific questions.
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To create a recipe, the ` -r <recipe_name> ` can be used. To list available
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- recipes, the ` --recipe-list ` and ` --recipe-list-short ` options were added.
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+ recipes, the ` --recipe-list ` and ` --recipe-list-short ` options were added.
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### Components changes
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@@ -16,7 +16,8 @@ resolution
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- The ` abyss ` and ` spades ` components emit GFA in a secondary channel.
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- The new ` bandage ` component can accept either FASTA from a primary channel
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or GFA from a secondary channel.
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- - Updated skesa to version 2.3.0
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+ - Updated skesa to version 2.3.0.
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+ - Updated mash based components for the latest version - 1.6.0-1.
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### New components
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Original file line number Diff line number Diff line change @@ -103,13 +103,13 @@ def __init__(self, **kwargs):
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self .directives = {
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"mashScreen" : {
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"container" : "flowcraft/mash-patlas" ,
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- "version" : "1.5.2 -1" ,
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+ "version" : "1.6.0 -1" ,
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"cpus" : 1 ,
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"memory" : "{ 4.GB * task.attempt }"
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},
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"mashOutputJson" : {
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"container" : "flowcraft/mash-patlas" ,
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- "version" : "1.5.2 -1" ,
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+ "version" : "1.6.0 -1" ,
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"cpus" : 1 ,
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"memory" : "'4GB'"
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}
@@ -154,7 +154,7 @@ def __init__(self, **kwargs):
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self .directives = {
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"mashSketchFasta" : {
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"container" : "flowcraft/mash-patlas" ,
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- "version" : "1.4. 1" ,
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+ "version" : "1.6.0- 1" ,
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"cpus" : 1 ,
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"memory" : "{ 4.GB * task.attempt }"
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},
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