phasmerge- OperationalError: unrecognized token

[wulouis]

Hi Autl,

After the successfully running of phasdetect step (runType = T), I tried to do the phasmerge (merge mode) with gtf annotation file (from Phytozome). My command was:
$ python3 phasmerge -mode merge -dir phased_09_18_15_31/ -pval 0.005 -gtf SBI.gtf -debug F

However, my running was stop and I got this error message:

Fn: Annotate

Preparing SQL table with GTF features
Feature table made with 313837 entries
Analysis for overlapping trans initialized
Traceback (most recent call last):
File "phasmerge.py", line 2704, in
File "phasmerge.py", line 2651, in main
File "phasmerge.py", line 1984, in overlapChecker
File "phasmerge.py", line 2069, in overlapTrans
sqlite3.OperationalError: unrecognized token: ".001G077000"

Would it be a format problem of gene locus name?

Cheers,
Louis