Merge pull request #128 from kgalens/fix-libz-minimal-docker

Fixed issue when running aws cli v2 on minimal docker instances (erro…

Author: wleepang

src/containers/nextflow/nextflow.aws.sh

@@ -52,7 +52,7 @@ cat ./nextflow.config
 
 # stage in session cache
 # .nextflow directory holds all session information for the current and past runs.
-# it should be `sync`'d with an s3 uri, so that runs from previous sessions can be 
+# it should be `sync`'d with an s3 uri, so that runs from previous sessions can be
 # resumed
 echo "== Restoring Session Cache =="
 aws s3 sync --no-progress $NF_LOGSDIR/.nextflow .nextflow

src/ecs-additions/fetch_and_run.sh

@@ -16,6 +16,7 @@
 # See below for usage instructions.
 
 #PATH="/bin:/usr/bin:/sbin:/usr/sbin:/usr/local/bin:/usr/local/sbin"
+export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/aws-cli/v2/current/dist
 BASENAME="${0##*/}"
 AWS="/usr/local/aws-cli/v2/current/bin/aws"