Fill data from uniprot

Completes protein data performing HTTP requests to Uniprot site. (this program will soon be replaced by a WS with Bio4j servlets as end-point) The jar file can be downloaded here

Arguments for the program:

1. Name of the XML file with predicted genes
2. Output XML filename with uniprot data incorporated

Sample of String used for the request:

http://www.uniprot.org/uniprot/?query=accession:Q8YZR1&format=tab&columns=protein names,organism,comment(FUNCTION),ec,interpro,go,pathway,families,keywords,length,subcellular locations,citation

Information retrieved from Uniprot and associated to predicted genes includes:

1. Protein names
2. Gene names
3. Organism
4. Comment (FUNCTION)
5. EC numbers
6. InterPro
7. Gene Ontology
8. Pathway
9. Protein family
10. Keywords
11. Length
12. Subcellular locations
13. PubMed ID
14. Comment (mass spectrometry)