Lists of signatures for subtypes

[lwaldron]

I've received a request for the lists of probesets Entrez IDs for the subtypes implemented in this package. I believe they're currently buried in compressed files of S4 objects; could you post them somewhere as plain text files that I can point interested readers to?

[lwaldron]

I got this started by extracting the Konecny and Verhaak Entrez IDs using the following code. @gmchen or @lgeistlinger am I missing a simpler way?

verhaak_entrez.txt
konecny_entrez.txt

library(consensusOV)
konecny <- rownames(consensusOV:::konecny.centroids) |>
  as.integer() |>
  sort()
write.table(
  konecny,
  file = "konecny_entrez.txt",
  row.names = FALSE,
  col.names = FALSE,
  quote = FALSE
)

verhaak <- consensusOV:::verhaak.genesets.entrez.ids |>
  unlist() |>
  as.integer() |>
  sort()

write.table(
  verhaak,
  file = "verhaak_entrez.txt",
  row.names = FALSE,
  col.names = FALSE,
  quote = FALSE
)