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Merge pull request #402 from Remi-Gau/res_in_derivative
[FIX] Add resolution metadata in derivative
2 parents be35808 + daded14 commit 1c30c6e

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33 files changed

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‎ds000001-fmriprep/code/update_res_in_json.py

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"""Add resolution metadata if json filename contains the res entity."""
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import json
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from pathlib import Path
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from rich import print
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root = Path(__file__).parent.parent
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files_to_update = root.glob("sub-*/*/sub*res-2*.json")
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for event in files_to_update:
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with open(event) as f:
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metadata = json.load(f)
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metadata["Resolution"] = "2mm, isotropic"
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with open(event, "w") as f:
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json.dump(metadata, f, indent=2)

‎ds000001-fmriprep/sub-10/anat/sub-10_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json

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{
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"RawSources": "tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz",
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"Type": "Brain"
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"Type": "Brain",
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-10/anat/sub-10_space-MNI152NLin2009cAsym_res-2_desc-preproc_T1w.json

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{
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"SkullStripped": true
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}
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"SkullStripped": true,
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-10/func/sub-10_task-balloonanalogrisktask_run-1_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json

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{
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"RawSources": [
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"sub-10/func/sub-10_task-balloonanalogrisktask_run-01_bold.nii.gz"
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]
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],
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-10/func/sub-10_task-balloonanalogrisktask_run-1_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json

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{
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"RepetitionTime": 2.0,
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"SkullStripped": false,
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"TaskName": "balloon analog risk task"
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"TaskName": "balloon analog risk task",
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-10/func/sub-10_task-balloonanalogrisktask_run-2_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json

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{
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"RawSources": [
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"sub-10/func/sub-10_task-balloonanalogrisktask_run-02_bold.nii.gz"
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]
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],
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-10/func/sub-10_task-balloonanalogrisktask_run-2_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json

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{
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"RepetitionTime": 2.0,
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"SkullStripped": false,
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"TaskName": "balloon analog risk task"
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"TaskName": "balloon analog risk task",
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-10/func/sub-10_task-balloonanalogrisktask_run-3_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json

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{
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"RawSources": [
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"sub-10/func/sub-10_task-balloonanalogrisktask_run-03_bold.nii.gz"
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]
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],
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-10/func/sub-10_task-balloonanalogrisktask_run-3_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json

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{
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"RepetitionTime": 2.0,
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"SkullStripped": false,
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"TaskName": "balloon analog risk task"
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"TaskName": "balloon analog risk task",
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-11/anat/sub-11_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json

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{
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"RawSources": "tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz",
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"Type": "Brain"
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"Type": "Brain",
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-11/anat/sub-11_space-MNI152NLin2009cAsym_res-2_desc-preproc_T1w.json

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{
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"SkullStripped": true
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}
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"SkullStripped": true,
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-11/func/sub-11_task-balloonanalogrisktask_run-1_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json

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{
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"RawSources": [
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"sub-11/func/sub-11_task-balloonanalogrisktask_run-01_bold.nii.gz"
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]
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],
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-11/func/sub-11_task-balloonanalogrisktask_run-1_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json

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{
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"RepetitionTime": 2.0,
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"SkullStripped": false,
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"TaskName": "balloon analog risk task"
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"TaskName": "balloon analog risk task",
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-11/func/sub-11_task-balloonanalogrisktask_run-2_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json

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{
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"RawSources": [
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"sub-11/func/sub-11_task-balloonanalogrisktask_run-02_bold.nii.gz"
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]
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],
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-11/func/sub-11_task-balloonanalogrisktask_run-2_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json

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{
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"RepetitionTime": 2.0,
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"SkullStripped": false,
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"TaskName": "balloon analog risk task"
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"TaskName": "balloon analog risk task",
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-11/func/sub-11_task-balloonanalogrisktask_run-3_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json

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{
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"RawSources": [
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"sub-11/func/sub-11_task-balloonanalogrisktask_run-03_bold.nii.gz"
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]
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],
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-11/func/sub-11_task-balloonanalogrisktask_run-3_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json

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{
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"RepetitionTime": 2.0,
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"SkullStripped": false,
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"TaskName": "balloon analog risk task"
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"TaskName": "balloon analog risk task",
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-13/anat/sub-13_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json

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{
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"RawSources": "tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz",
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"Type": "Brain"
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"Type": "Brain",
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-13/anat/sub-13_space-MNI152NLin2009cAsym_res-2_desc-preproc_T1w.json

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{
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"SkullStripped": true
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}
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"SkullStripped": true,
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-13/func/sub-13_task-balloonanalogrisktask_run-1_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json

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{
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"RawSources": [
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"sub-13/func/sub-13_task-balloonanalogrisktask_run-01_bold.nii.gz"
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]
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],
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-13/func/sub-13_task-balloonanalogrisktask_run-1_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json

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{
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"RepetitionTime": 2.0,
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"SkullStripped": false,
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"TaskName": "balloon analog risk task"
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"TaskName": "balloon analog risk task",
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-13/func/sub-13_task-balloonanalogrisktask_run-2_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json

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{
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"RawSources": [
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"sub-13/func/sub-13_task-balloonanalogrisktask_run-02_bold.nii.gz"
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]
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],
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-13/func/sub-13_task-balloonanalogrisktask_run-2_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json

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{
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"RepetitionTime": 2.0,
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"SkullStripped": false,
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"TaskName": "balloon analog risk task"
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"TaskName": "balloon analog risk task",
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-13/func/sub-13_task-balloonanalogrisktask_run-3_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json

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{
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"RawSources": [
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"sub-13/func/sub-13_task-balloonanalogrisktask_run-03_bold.nii.gz"
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]
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],
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-13/func/sub-13_task-balloonanalogrisktask_run-3_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json

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{
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"RepetitionTime": 2.0,
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"SkullStripped": false,
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"TaskName": "balloon analog risk task"
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"TaskName": "balloon analog risk task",
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-16/anat/sub-16_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json

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{
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"RawSources": "tpl-MNI152NLin2009cAsym/tpl-MNI152NLin2009cAsym_res-02_desc-brain_mask.nii.gz",
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"Type": "Brain"
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"Type": "Brain",
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-16/anat/sub-16_space-MNI152NLin2009cAsym_res-2_desc-preproc_T1w.json

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{
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"SkullStripped": true
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}
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"SkullStripped": true,
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-16/func/sub-16_task-balloonanalogrisktask_run-1_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json

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{
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"RawSources": [
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"sub-16/func/sub-16_task-balloonanalogrisktask_run-01_bold.nii.gz"
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]
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],
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-16/func/sub-16_task-balloonanalogrisktask_run-1_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json

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{
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"RepetitionTime": 2.0,
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"SkullStripped": false,
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"TaskName": "balloon analog risk task"
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"TaskName": "balloon analog risk task",
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-16/func/sub-16_task-balloonanalogrisktask_run-2_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json

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{
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"RawSources": [
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"sub-16/func/sub-16_task-balloonanalogrisktask_run-02_bold.nii.gz"
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]
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],
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-16/func/sub-16_task-balloonanalogrisktask_run-2_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json

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{
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"RepetitionTime": 2.0,
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"SkullStripped": false,
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"TaskName": "balloon analog risk task"
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"TaskName": "balloon analog risk task",
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-16/func/sub-16_task-balloonanalogrisktask_run-3_space-MNI152NLin2009cAsym_res-2_desc-brain_mask.json

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{
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"RawSources": [
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"sub-16/func/sub-16_task-balloonanalogrisktask_run-03_bold.nii.gz"
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]
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],
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"Resolution": "2mm, isotropic"
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}

‎ds000001-fmriprep/sub-16/func/sub-16_task-balloonanalogrisktask_run-3_space-MNI152NLin2009cAsym_res-2_desc-preproc_bold.json

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{
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"RepetitionTime": 2.0,
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"SkullStripped": false,
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"TaskName": "balloon analog risk task"
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"TaskName": "balloon analog risk task",
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"Resolution": "2mm, isotropic"
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}

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