Merge pull request #482 from effigies/fix/qmri-metadata

effigies · web-flow · commit 5a7e378f8c57 · 2025-02-21T09:29:52.000-05:00
fix: Update missing metadata to qMRI sequences
diff --git a/qmri_irt1/IRT1.json b/qmri_irt1/IRT1.json
@@ -3,7 +3,7 @@
   "Manufacturer": "Siemens",
   "ManufacturerModelName": "Skyra",
   "PulseSequenceType": "IR",
-  "RepetitionTime": 2.550,
+  "RepetitionTimeExcitation": 2.550,
   "FlipAngle": 3,
   "EchoTime": 0.014
 }
diff --git a/qmri_irt1/derivatives/qMRLab/sub-01/anat/sub-01_M0map.json b/qmri_irt1/derivatives/qMRLab/sub-01/anat/sub-01_M0map.json
@@ -9,7 +9,7 @@
   "Manufacturer": "Siemens",
   "ManufacturerModelName": "Skyra",
   "PulseSequenceType": "IR",
-  "RepetitionTime": "2.250",
+  "RepetitionTimeExcitation": "2.250",
   "EchoTime": "0.014",
   "InversionTime": ["0.05","0.4","1.1","2.5"],
   "EstimationPaper": "Barral et. al.MRM, 2010",
diff --git a/qmri_irt1/derivatives/qMRLab/sub-01/anat/sub-01_T1map.json b/qmri_irt1/derivatives/qMRLab/sub-01/anat/sub-01_T1map.json
@@ -9,7 +9,7 @@
   "Manufacturer": "Siemens",
   "ManufacturerModelName": "Skyra",
   "PulseSequenceType": "IR",
-  "RepetitionTime": "2.250",
+  "RepetitionTimeExcitation": "2.250",
   "EchoTime": "0.014",
   "InversionTime": ["0.05","0.4","1.1","2.5"],
   "EstimationPaper": "Barral et. al.MRM, 2010",
diff --git a/qmri_mpm/derivatives/hmri/sub-01/anat/sub-01_MTsat.json b/qmri_mpm/derivatives/hmri/sub-01/anat/sub-01_MTsat.json
@@ -36,7 +36,7 @@
   "ScanningSequence": "RM",
   "SequenceVariant": "SP",
   "SequenceName": "fl3d_1i3d8",
-  "RepetitionTime": "0.025",
+  "RepetitionTimeExcitation": "0.025",
   "FlipAngle": [
     "6",
     "21"
diff --git a/qmri_mpm/derivatives/hmri/sub-01/anat/sub-01_R1map.json b/qmri_mpm/derivatives/hmri/sub-01/anat/sub-01_R1map.json
@@ -36,7 +36,7 @@
   "ScanningSequence": "RM",
   "SequenceVariant": "SP",
   "SequenceName": "fl3d_1i3d8",
-  "RepetitionTime": "0.025",
+  "RepetitionTimeExcitation": "0.025",
   "FlipAngle": [
     "6",
     "21"
diff --git a/qmri_mpm/derivatives/hmri/sub-01/anat/sub-01_R2starmap.json b/qmri_mpm/derivatives/hmri/sub-01/anat/sub-01_R2starmap.json
@@ -36,7 +36,7 @@
   "ScanningSequence": "RM",
   "SequenceVariant": "SP",
   "SequenceName": "fl3d_1i3d8",
-  "RepetitionTime": "0.025",
+  "RepetitionTimeExcitation": "0.025",
   "FlipAngle": [
     "6",
     "21"
diff --git a/qmri_mtsat/derivatives/qMRLab/sub-01/anat/sub-01_M0map.json b/qmri_mtsat/derivatives/qMRLab/sub-01/anat/sub-01_M0map.json
@@ -8,7 +8,7 @@
     "Manufacturer": "Siemens",
     "ManufacturerModelName": "TrioTim",
     "PulseSequenceType": "SPGR",
-    "RepetitionTime": 0.028,
+    "RepetitionTimeExcitation": 0.028,
     "FlipAngle": ["6","6","20"],
     "MTState": [false,false,true],
     "EstimationPaper": "Helms et al. MRM, 2008",
diff --git a/qmri_mtsat/derivatives/qMRLab/sub-01/anat/sub-01_MTRmap.json b/qmri_mtsat/derivatives/qMRLab/sub-01/anat/sub-01_MTRmap.json
@@ -7,7 +7,7 @@
     "Manufacturer": "Siemens",
     "ManufacturerModelName": "TrioTim",
     "PulseSequenceType": "SPGR",
-    "RepetitionTime": 0.028,
+    "RepetitionTimeExcitation": 0.028,
     "FlipAngle": "6",
     "MTState": [false, true],
     "EstimationPaper": "Helms et al. MRM, 2008",
diff --git a/qmri_mtsat/derivatives/qMRLab/sub-01/anat/sub-01_MTsat.json b/qmri_mtsat/derivatives/qMRLab/sub-01/anat/sub-01_MTsat.json
@@ -8,7 +8,7 @@
     "Manufacturer": "Siemens",
     "ManufacturerModelName": "TrioTim",
     "PulseSequenceType": "SPGR",
-    "RepetitionTime": 0.028,
+    "RepetitionTimeExcitation": 0.028,
     "FlipAngle": ["6","6","20"],
     "MTState": [false,false,true],
     "EstimationPaper": "Helms et al. MRM, 2008",
diff --git a/qmri_mtsat/derivatives/qMRLab/sub-01/anat/sub-01_T1map.json b/qmri_mtsat/derivatives/qMRLab/sub-01/anat/sub-01_T1map.json
@@ -8,7 +8,7 @@
     "Manufacturer": "Siemens",
     "ManufacturerModelName": "TrioTim",
     "PulseSequenceType": "SPGR",
-    "RepetitionTime": 0.028,
+    "RepetitionTimeExcitation": 0.028,
     "FlipAngle": ["6","6","20"],
     "MTState": [false,false,true],
     "EstimationPaper": "Helms et al. MRM, 2008",
diff --git a/qmri_mtsat/sub-01/anat/sub-01_flip-1_mt-off_MTS.json b/qmri_mtsat/sub-01/anat/sub-01_flip-1_mt-off_MTS.json
@@ -1,5 +1,5 @@
 {
   "FlipAngle": 6,
   "MTState": false,
-  "RepetitionTime": 0.028
+  "RepetitionTimeExcitation": 0.028
 }
diff --git a/qmri_mtsat/sub-01/anat/sub-01_flip-1_mt-on_MTS.json b/qmri_mtsat/sub-01/anat/sub-01_flip-1_mt-on_MTS.json
@@ -1,5 +1,5 @@
 {
   "FlipAngle": 6,
   "MTState": true,
-  "RepetitionTime": 0.028
+  "RepetitionTimeExcitation": 0.028
 }
diff --git a/qmri_mtsat/sub-01/anat/sub-01_flip-2_mt-off_MTS.json b/qmri_mtsat/sub-01/anat/sub-01_flip-2_mt-off_MTS.json
@@ -1,5 +1,5 @@
 {
   "FlipAngle": 20,
   "MTState": false,
-  "RepetitionTime": 0.028
+  "RepetitionTimeExcitation": 0.028
 }
diff --git a/qmri_sa2rage/sub-01/fmap/sub-01_flip-1_inv-1_TB1SRGE.json b/qmri_sa2rage/sub-01/fmap/sub-01_flip-1_inv-1_TB1SRGE.json
@@ -32,6 +32,7 @@
   "InstitutionName": "Robarts_Reserch_Institute",
   "InstitutionalDepartmentName": "Department",
   "InversionTime": 45,
+  "NumberShots": 1,
   "MRAcquisitionType": "3D",
   "MagneticFieldStrength": 6.98,
   "Manufacturer": "Siemens",
diff --git a/qmri_sa2rage/sub-01/fmap/sub-01_flip-2_inv-2_TB1SRGE.json b/qmri_sa2rage/sub-01/fmap/sub-01_flip-2_inv-2_TB1SRGE.json
@@ -3,6 +3,7 @@
   "RepetitionTimeExcitation": 0.0275,
   "InversionTime": 1.8,
   "FlipAngle": 11,
+  "NumberShots": 1,
   "AcquisitionMatrixPE": 128,
   "AcquisitionNumber": 1,
   "AcquisitionTime": "16:14:17.007500",
@@ -49,7 +50,6 @@
   "ReceiveCoilName": "CFMM_8Tx32Rx",
   "ReconMatrixPE": 128,
   "RefLinesPE": 30,
-  "RepetitionTime": 2.4,
   "ScanOptions": "SR_PFP",
   "ScanningSequence": "GR",
   "SequenceName": "sa2rage3d1_ns",
diff --git a/qmri_tb1tfl/sub-01/fmap/sub-01_acq-anat_TB1TFL.json b/qmri_tb1tfl/sub-01/fmap/sub-01_acq-anat_TB1TFL.json
@@ -4,7 +4,7 @@
   "ManufacturerModelName": "TrioTim",
   "PulseSequenceType": "GR",
   "SequenceName": "tfl_b1_map",
-  "RepetitionTime": "6.8",
+  "RepetitionTimeExcitation": "6.8",
   "FlipAngle": 38,
   "EchoTime": 1.97,
   "AcquisitionVoxelSize": ["3","3","5"]
diff --git a/qmri_tb1tfl/sub-01/fmap/sub-01_acq-famp_TB1TFL.json b/qmri_tb1tfl/sub-01/fmap/sub-01_acq-famp_TB1TFL.json
@@ -4,7 +4,7 @@
   "ManufacturerModelName": "TrioTim",
   "PulseSequenceType": "GR",
   "SequenceName": "tfl_b1_map",
-  "RepetitionTime": "6.8",
+  "RepetitionTimeExcitation": "6.8",
   "FlipAngle": 38,
   "EchoTime": 1.97,
   "AcquisitionVoxelSize": ["3","3","5"]
diff --git a/qmri_vfa/VFA.json b/qmri_vfa/VFA.json
@@ -3,5 +3,5 @@
   "Manufacturer": "Siemens",
   "ManufacturerModelName": "TrioTim",
   "PulseSequenceType": "SPGR",
-  "RepetitionTime": 0.0150
+  "RepetitionTimeExcitation": 0.0150
 }
diff --git a/qmri_vfa/derivatives/qMRLab/sub-01/anat/sub-01_M0map.json b/qmri_vfa/derivatives/qMRLab/sub-01/anat/sub-01_M0map.json
@@ -8,7 +8,7 @@
   "Manufacturer": "Siemens",
   "ManufacturerModelName": "TrioTim",
   "PulseSequenceType": "SPGR",
-  "RepetitionTime": 0.0150,
+  "RepetitionTimeExcitation": 0.0150,
   "FlipAngle": [
     "3",
     "20"
diff --git a/qmri_vfa/derivatives/qMRLab/sub-01/anat/sub-01_T1map.json b/qmri_vfa/derivatives/qMRLab/sub-01/anat/sub-01_T1map.json
@@ -8,7 +8,7 @@
   "Manufacturer": "Siemens",
   "ManufacturerModelName": "TrioTim",
   "PulseSequenceType": "SPGR",
-  "RepetitionTime": 0.0150,
+  "RepetitionTimeExcitation": 0.0150,
   "FlipAngle": [
     "3",
     "20"
diff --git a/qmri_vfa/derivatives/qMRLab/sub-01/fmap/sub-01_TB1map.json b/qmri_vfa/derivatives/qMRLab/sub-01/fmap/sub-01_TB1map.json
@@ -10,7 +10,7 @@
     "ManufacturerModelName": "Skyra",
     "MRAcquisitionType": "3D",
     "PulseSequenceType": "SPGR",
-    "RepetitionTime": [0.02,0.1],
+    "RepetitionTimeExcitation": [0.02,0.1],
     "SpoilingState": true,
     "SpoilingType": "COMBINED",
     "SpoilingGradientMoment": [0.540,2.250],
diff --git a/qmri_vfa/sub-01/anat/sub-01_flip-1_VFA.json b/qmri_vfa/sub-01/anat/sub-01_flip-1_VFA.json
@@ -1,4 +1,4 @@
 {
   "FlipAngle": 3,
-  "RepetitionTime": 0.0150
+  "RepetitionTimeExcitation": 0.0150
 }
diff --git a/qmri_vfa/sub-01/anat/sub-01_flip-2_VFA.json b/qmri_vfa/sub-01/anat/sub-01_flip-2_VFA.json
@@ -1,4 +1,4 @@
 {
   "FlipAngle": 20,
-  "RepetitionTime": 0.0150
+  "RepetitionTimeExcitation": 0.0150
 }
diff --git a/qmri_vfa/sub-01/fmap/sub-01_acq-tr1_TB1AFI.json b/qmri_vfa/sub-01/fmap/sub-01_acq-tr1_TB1AFI.json
@@ -5,7 +5,7 @@
     "ManufacturerModelName": "Skyra",
     "MRAcquisitionType": "3D",
     "PulseSequenceType": "SPGR",
-    "RepetitionTime": 0.02,
+    "RepetitionTimeExcitation": 0.02,
     "SpoilingState": true,
     "SpoilingType": "COMBINED",
     "SpoilingGradientMoment": 0.540,
diff --git a/qmri_vfa/sub-01/fmap/sub-01_acq-tr2_TB1AFI.json b/qmri_vfa/sub-01/fmap/sub-01_acq-tr2_TB1AFI.json
@@ -5,7 +5,7 @@
     "ManufacturerModelName": "Skyra",
     "MRAcquisitionType": "3D",
     "PulseSequenceType": "SPGR",
-    "RepetitionTime": 0.1,
+    "RepetitionTimeExcitation": 0.1,
     "SpoilingState": true,
     "SpoilingType": "COMBINED",
     "SpoilingGradientMoment": 2.250,

Original file line number	Diff line number	Diff line change
`@@ -3,7 +3,7 @@`
`3`	`3`	`"Manufacturer": "Siemens",`
`4`	`4`	`"ManufacturerModelName": "Skyra",`
`5`	`5`	`"PulseSequenceType": "IR",`
`6`		`- "RepetitionTime": 2.550,`
	`6`	`+ "RepetitionTimeExcitation": 2.550,`
`7`	`7`	`"FlipAngle": 3,`
`8`	`8`	`"EchoTime": 0.014`
`9`	`9`	`}`