Skip to content

Commit f213067

Browse files
authored
Merge pull request #487 from effigies/fix/dataset-listing
doc: Add pheno004 to dataset listing
2 parents 49c3a08 + 37e2cba commit f213067

File tree

3 files changed

+24
-0
lines changed

3 files changed

+24
-0
lines changed

README.md

Lines changed: 11 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -351,3 +351,14 @@ DO NOT EDIT DIRECTLY.
351351
| [qmri_sa2rage](https://github.com/bids-standard/bids-examples/tree/master/qmri_sa2rage) | Fast B1+ mapping using SA2RAGE | fmap | TB1SRGE | `not publicly available` | [@agahkarakuzu](https://github.com/agahkarakuzu) |
352352
| [qmri_tb1tfl](https://github.com/bids-standard/bids-examples/tree/master/qmri_tb1tfl) | B1+ mapping with TurboFLASH readout. | fmap | TB1TFL | `not publicly available` | [@agahkarakuzu](https://github.com/agahkarakuzu) |
353353
| [qmri_vfa](https://github.com/bids-standard/bids-examples/tree/master/qmri_vfa) | Variable Flip Angle T1 mapping. Includes an Actual Flip Angle (AFI) B1+ mapping example. | anat, fmap | TB1AFI, VFA | [link](https://osf.io/k4bs5/) | [@agahkarakuzu](https://github.com/agahkarakuzu) |
354+
355+
### Phenotype
356+
357+
<!--
358+
TABLE BELOW IS GENERATED AUTOMATICALLY.
359+
DO NOT EDIT DIRECTLY.
360+
-->
361+
362+
| name | description | datatypes | suffixes | link to full data | maintained by |
363+
|:--------------------------------------------------------------------------------|:-----------------------------------------------------------------|:----------------|:-----------|:--------------------|:-----------------------------------------|
364+
| [pheno004](https://github.com/bids-standard/bids-examples/tree/master/pheno004) | Minimal dataset with subjects with imaging and/or phenotype data | phenotype, anat | T1w | n/a | [@ericearl](https://github.com/ericearl) |

dataset_listing.tsv

Lines changed: 1 addition & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -82,3 +82,4 @@ mrs_fmrs Functional MRS data involving a pain stimulus task from 15 subjects [li
8282
2d_mb_pcasl Siemens 2D MultiBand Multi-delay PCASL (m0 and noRF included within timeseries) [link](https://osf.io/xrkc4/) [@aptinis](https://github.com/aptinis) anat, fmap, perf T1w, asl, aslcontext, epi
8383
xeeg_hed_score EEG and iEEG data with annotations of artifacts, seizures and modulators using HED-SCORE [@dorahermes](https://github.com/dorahermes) anat, eeg, ieeg T1w, channels, coordsystem, eeg, electrodes, events, ieeg
8484
dwi_deriv exemplifies the storage of diffusion MRI derivates that may be generated on the Siemens XA platform. dwi dwi
85+
pheno004 Minimal dataset with subjects with imaging and/or phenotype data [@ericearl](https://github.com/ericearl) phenotype, anat T1w

tools/print_dataset_listing.py

Lines changed: 12 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,14 @@
1+
#!/usr/bin/env python
2+
# /// script
3+
# requires-python = ">=3.12"
4+
# dependencies = [
5+
# "pandas",
6+
# "pybids",
7+
# "rich",
8+
# "tabulate",
9+
# ]
10+
# ///
11+
112
"""Take the listing of examples datasets
213
and turns it into a markdown document with a series of markdown tables.
314
@@ -45,6 +56,7 @@
4556
"NIRS": "nirs",
4657
"PET": "pet",
4758
"qMRI": "",
59+
"Phenotype": "phenotype",
4860
}
4961

5062
DELIMITER = "<!-- ADD EXAMPLE LISTING HERE -->"

0 commit comments

Comments
 (0)