diff --git a/README.md b/README.md index e5d4f521c..1f25af9ba 100644 --- a/README.md +++ b/README.md @@ -351,3 +351,14 @@ DO NOT EDIT DIRECTLY. | [qmri_sa2rage](https://github.com/bids-standard/bids-examples/tree/master/qmri_sa2rage) | Fast B1+ mapping using SA2RAGE | fmap | TB1SRGE | `not publicly available` | [@agahkarakuzu](https://github.com/agahkarakuzu) | | [qmri_tb1tfl](https://github.com/bids-standard/bids-examples/tree/master/qmri_tb1tfl) | B1+ mapping with TurboFLASH readout. | fmap | TB1TFL | `not publicly available` | [@agahkarakuzu](https://github.com/agahkarakuzu) | | [qmri_vfa](https://github.com/bids-standard/bids-examples/tree/master/qmri_vfa) | Variable Flip Angle T1 mapping. Includes an Actual Flip Angle (AFI) B1+ mapping example. | anat, fmap | TB1AFI, VFA | [link](https://osf.io/k4bs5/) | [@agahkarakuzu](https://github.com/agahkarakuzu) | + +### Phenotype + + + +| name | description | datatypes | suffixes | link to full data | maintained by | +|:--------------------------------------------------------------------------------|:-----------------------------------------------------------------|:----------------|:-----------|:--------------------|:-----------------------------------------| +| [pheno004](https://github.com/bids-standard/bids-examples/tree/master/pheno004) | Minimal dataset with subjects with imaging and/or phenotype data | phenotype, anat | T1w | n/a | [@ericearl](https://github.com/ericearl) | diff --git a/dataset_listing.tsv b/dataset_listing.tsv index 2b0a8afd2..52cf73cb2 100644 --- a/dataset_listing.tsv +++ b/dataset_listing.tsv @@ -82,3 +82,4 @@ mrs_fmrs Functional MRS data involving a pain stimulus task from 15 subjects [li 2d_mb_pcasl Siemens 2D MultiBand Multi-delay PCASL (m0 and noRF included within timeseries) [link](https://osf.io/xrkc4/) [@aptinis](https://github.com/aptinis) anat, fmap, perf T1w, asl, aslcontext, epi xeeg_hed_score EEG and iEEG data with annotations of artifacts, seizures and modulators using HED-SCORE [@dorahermes](https://github.com/dorahermes) anat, eeg, ieeg T1w, channels, coordsystem, eeg, electrodes, events, ieeg dwi_deriv exemplifies the storage of diffusion MRI derivates that may be generated on the Siemens XA platform. dwi dwi +pheno004 Minimal dataset with subjects with imaging and/or phenotype data [@ericearl](https://github.com/ericearl) phenotype, anat T1w diff --git a/tools/print_dataset_listing.py b/tools/print_dataset_listing.py index 18ebd78af..c4d714037 100644 --- a/tools/print_dataset_listing.py +++ b/tools/print_dataset_listing.py @@ -1,3 +1,14 @@ +#!/usr/bin/env python +# /// script +# requires-python = ">=3.12" +# dependencies = [ +# "pandas", +# "pybids", +# "rich", +# "tabulate", +# ] +# /// + """Take the listing of examples datasets and turns it into a markdown document with a series of markdown tables. @@ -45,6 +56,7 @@ "NIRS": "nirs", "PET": "pet", "qMRI": "", + "Phenotype": "phenotype", } DELIMITER = ""