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Update python-app.yml
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.github/workflows/python-app.yml

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@@ -47,3 +47,8 @@ jobs:
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- name: Test percolator ms2rescore
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run: |
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rescoring ms2rescore --psm_file TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_comet.idXML --spectrum_path TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzML --processes 2 --ms2pip_model HCD2021 --feature_generators 'ms2pip,deeplc' --id_decoy_pattern ^rev --test_fdr 0.05
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- name: Upload coverage reports to Codecov
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uses: codecov/codecov-action@v5
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with:
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token: ${{ secrets.CODECOV_TOKEN }}
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slug: bigbio/quantms-rescoring

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