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Updating compiled documentation
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‎docs/_static/basic.css

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table.highlighttable td.linenos,
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div.doctest > div.highlight span.gp { /* gp: Generic.Prompt */
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div.highlight span.gp { /* gp: Generic.Prompt */
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user-select: none;
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‎docs/_static/doctools.js

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window.location.href = prevHref;
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break;
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case 39: // right
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var nextHref = $('link[rel="next"]').prop('href');
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‎docs/_static/documentation_options.js

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var DOCUMENTATION_OPTIONS = {
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URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
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VERSION: '0.1.10',
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VERSION: '0.1.11',
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LANGUAGE: 'en',
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COLLAPSE_INDEX: false,
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BUILDER: 'html',

‎docs/about.html

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<html lang="en">
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<meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
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<title>About BioSimulators-BioNetGen &#8212; BioSimulators-BioNetGen 0.1.10 documentation</title>
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<meta name="viewport" content="width=device-width, initial-scale=1.0" />
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<title>About BioSimulators-BioNetGen &#8212; BioSimulators-BioNetGen 0.1.11 documentation</title>
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<script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
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<h3 id="searchlabel">Quick search</h3>
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<div class="body" role="main">
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<section id="about-biosimulators-bionetgen">
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<div class="section" id="about-biosimulators-bionetgen">
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<h1>About BioSimulators-BioNetGen<a class="headerlink" href="#about-biosimulators-bionetgen" title="Permalink to this headline"></a></h1>
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<section id="license">
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<div class="section" id="license">
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<h2>License<a class="headerlink" href="#license" title="Permalink to this headline"></a></h2>
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<p>This package is released under the <a class="reference external" href="https://github.com/biosimulators/Biosimulators_BioNetGen/blob/dev/LICENSE">MIT License</a>. BioNetGen is released under the <a class="reference external" href="https://github.com/RuleWorld/bionetgen/blob/master/LICENSE">MIT License</a>.</p>
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<section id="development-team">
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<div class="section" id="development-team">
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<h2>Development team<a class="headerlink" href="#development-team" title="Permalink to this headline"></a></h2>
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<p>This package was developed by the <a class="reference external" href="https://www.karrlab.org">Karr Lab</a> at the Icahn School of Medicine at Mount Sinai and the <a class="reference external" href="https://reproduciblebiomodels.org/">Center for Reproducible Biomedical Modeling</a>. BioNetGen was developed by the <a class="reference external" href="https://www.csb.pitt.edu/Faculty/Faeder/">Faeder Lab</a> at the University of Pittsburgh.</p>
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</div>
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<div class="section" id="questions-and-comments">
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<h2>Questions and comments<a class="headerlink" href="#questions-and-comments" title="Permalink to this headline"></a></h2>
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<p>Please contact the <a class="reference external" href="mailto:info&#37;&#52;&#48;biosimulators&#46;org">BioSimulators Team</a> with any questions or comments about the command-line program or Docker image. Please contact the <a class="reference external" href="mailto:bionetgen&#46;help&#37;&#52;&#48;gmail&#46;com">BioNetGen Team</a> with any questions or comments about BioNetGen.</p>
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‎docs/genindex.html

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<meta charset="utf-8" />
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<meta name="viewport" content="width=device-width, initial-scale=1.0" />
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<title>Index &#8212; BioSimulators-BioNetGen 0.1.10 documentation</title>
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<title>Index &#8212; BioSimulators-BioNetGen 0.1.11 documentation</title>
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<h2 id="G">G</h2>
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<table style="width: 100%" class="indextable genindextable"><tr>
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<td style="width: 33%; vertical-align: top;"><ul>
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<li><a href="source/biosimulators_bionetgen.html#biosimulators_bionetgen.utils.get_bionetgen_version">get_bionetgen_version() (in module biosimulators_bionetgen.utils)</a>
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<li><a href="source/biosimulators_bionetgen.html#biosimulators_bionetgen.get_simulator_version">get_simulator_version() (in module biosimulators_bionetgen)</a>
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‎docs/index.html

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<html lang="en">
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<meta charset="utf-8" />
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<title>BioSimulators-BioNetGen documentation &#8212; BioSimulators-BioNetGen 0.1.10 documentation</title>
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<meta name="viewport" content="width=device-width, initial-scale=1.0" />
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<title>BioSimulators-BioNetGen documentation &#8212; BioSimulators-BioNetGen 0.1.11 documentation</title>
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<h1>BioSimulators-BioNetGen documentation<a class="headerlink" href="#biosimulators-bionetgen-documentation" title="Permalink to this headline"></a></h1>
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<p>BioSimulators-BioNetGen provides a <a class="reference external" href="https://biosimulators.org">BioSimulators</a>-compliant command-line interface to the <a class="reference external" href="https://bionetgen.org">BioNetGen</a> biological simulation tool. A Docker image for this package is also available.</p>
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<p>This command-line interface and Docker image enable users to use BioNetGen to execute <a class="reference external" href="https://combinearchive.org/">COMBINE/OMEX archives</a> that describe one or more simulation experiments (in <a class="reference external" href="https://sed-ml.org">SED-ML format</a>) of one or more models (in <a class="reference external" href="https://bionetgen.org">BNGL format</a>).</p>
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<p>A list of the algorithms and algorithm parameters supported by BioNetGen is available at <a class="reference external" href="https://biosimulators.org/simulators/bionetgen">BioSimulators</a>.</p>
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<p>A simple web application and web service for using BioNetGen to execute COMBINE/OMEX archives is also available at <a class="reference external" href="https://run.biosimulations.org">runBioSimulations</a>.</p>
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‎docs/installation.html

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<title>Installation instructions &#8212; BioSimulators-BioNetGen 0.1.11 documentation</title>
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<p>BioSimulators-BioNetGen is available as a command-line program and as a command-line program encapsulated into a Docker image.</p>
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<p>After installing <a class="reference external" href="https://www.python.org/downloads/">Python</a> (&gt;= 3.7), <a class="reference external" href="https://pip.pypa.io/">pip</a>, and <a class="reference external" href="https://bionetgen.org/">BioNetGen</a>, run the following command to install BioSimulators-BioNetGen:</p>
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<p>After installing <a class="reference external" href="https://docs.docker.com/get-docker/">Docker</a>, run the following command to install the Docker image for BioSimulators-BioNetGen:</p>
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‎docs/py-modindex.html

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‎docs/search.html

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