feat: added method to get the version of BioNetGen

Author: jonrkarr

biosimulators_bionetgen/__init__.py

@@ -1,4 +1,20 @@
 from ._version import __version__  # noqa: F401
 # :obj:`str`: version
 
+from .config import Config
 from .core import exec_sedml_docs_in_combine_archive  # noqa: F401
+
+import subprocess
+
+
+__all = ['__version__', 'get_simulator_version']
+
+
+def get_simulator_version():
+    """ Get the version of BioNetGen
+
+    Returns:
+        :obj:`str`: version
+    """
+    config = Config()
+    return subprocess.check_output([config.bionetgen_path, '--version']).decode().strip().split(' ')[2]

biosimulators_bionetgen/__main__.py

@@ -6,13 +6,13 @@
 :License: MIT
 """
 
+from . import get_simulator_version
 from ._version import __version__
 from .core import exec_sedml_docs_in_combine_archive
-from .utils import get_bionetgen_version
 from biosimulators_utils.simulator.cli import build_cli
 
 App = build_cli('bionetgen', __version__,
-                'BioNetGen', get_bionetgen_version(), 'https://bionetgen.org',
+                'BioNetGen', get_simulator_version(), 'https://bionetgen.org',
                 exec_sedml_docs_in_combine_archive)
 
 

biosimulators_bionetgen/utils.py

@@ -25,7 +25,6 @@
 import tempfile
 
 __all__ = [
-    'get_bionetgen_version',
     'add_model_attribute_change_to_task',
     'add_variables_to_model',
     'add_simulation_to_task',
@@ -34,16 +33,6 @@
 ]
 
 
-def get_bionetgen_version():
-    """ Get the version of BioNetGen
-
-    Returns:
-        :obj:`str`: version
-    """
-    config = Config()
-    return subprocess.check_output([config.bionetgen_path, '--version']).decode().strip().split(' ')[2]
-
-
 def add_model_attribute_change_to_task(task, change):
     """ Encode SED model attribute changes into a BioNetGen task
 

tests/test_utils.py

@@ -1,7 +1,7 @@
+from biosimulators_bionetgen import get_simulator_version
 from biosimulators_bionetgen.config import Config
 from biosimulators_bionetgen.data_model import Task
-from biosimulators_bionetgen.utils import (get_bionetgen_version,
-                                           add_model_attribute_change_to_task,
+from biosimulators_bionetgen.utils import (add_model_attribute_change_to_task,
                                            add_variables_to_model,
                                            add_simulation_to_task,
                                            exec_bionetgen_task,
@@ -31,8 +31,8 @@ def setUp(self):
     def tearDown(self):
         shutil.rmtree(self.dirname)
 
-    def test_get_bionetgen_version(self):
-        self.assertRegex(get_bionetgen_version(), r'^\d+\.\d+\.\d+$')
+    def test_get_simulator_version(self):
+        self.assertRegex(get_simulator_version(), r'^\d+\.\d+\.\d+$')
 
     def test_add_model_attribute_change_to_task(self):
         model_filename = os.path.join(os.path.dirname(__file__), 'fixtures', 'test.bngl')