Move optional dependencies from dev_requirements to pyproject.toml

.github/dependabot.yml

@@ -11,7 +11,7 @@ updates:
       interval: "daily"
 
   - package-ecosystem: "pip" # See documentation for possible values
-    directory: "/dev_requirements/" # Location of package manifests
+    directory: "/" # Location of package manifests
     schedule:
       interval: "weekly"
   # Maintain dependencies for GitHub Actions

.github/workflows/python-publish-scheduled.yml

@@ -106,7 +106,7 @@ jobs:
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          pip install -r dev_requirements/requirements-packaging.txt
+          pip install .[packaging]
       - name: Build wheel and source distributions
         run: python -m build
       - name: Publish distribution 📦 to PyPI

.github/workflows/python-publish.yml

@@ -30,7 +30,11 @@ jobs:
           tox -e tests
   check_version_tag:
     name: Check if the version tag is correct
-    runs-on: ubuntu-latest
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        python-version: [ "3.12" ]
+        os: [ ubuntu-latest ]
     steps:
       - name: Check out Git repository
         uses: actions/checkout@v4
@@ -55,7 +59,11 @@ jobs:
           --gh-token ${{ secrets.GITHUB_TOKEN }} --major-bump-disallowed
   json_schemas:
     name: Generate JSON-Schemas
-    runs-on: ubuntu-latest
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        python-version: [ "3.12" ]
+        os: [ ubuntu-latest ]
     needs: [tests, check_version_tag]
     concurrency: build-n-publish-json-schemas
     steps:
@@ -185,7 +193,7 @@ jobs:
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          pip install -r dev_requirements/requirements-packaging.txt
+          pip install .[packaging]
       - name: Build wheel and source distributions
         run: python -m build
       - name: Publish distribution 📦 to PyPI

pyproject.toml

@@ -27,10 +27,47 @@ classifiers = [
   "Programming Language :: Python :: 3.11",
   "Programming Language :: Python :: 3.12",
 ]
-# This list must be in synq with the ./requirements.in file!
-dependencies = ["iso3166", "pydantic>=2.0.0", "pyhumps"]
+dependencies = [
+  "iso3166",
+  "pydantic>=2.0.0",
+  "pyhumps"
+]# This list must be in synq with the ./requirements. in file!
+# any dependency added here should also be added in docs/requirements.in and docs/requirements.txt respectively
 dynamic = ["readme", "version"]
 
+[project.optional-dependencies]
+coverage = [
+    "coverage==7.6.4"
+]
+formatting = [
+    "black==24.10.0",
+    "isort==5.13.2"
+]
+json_schema = [
+    "click==8.1.7"
+]
+linting = [
+    "pylint==3.2.7"
+]
+spell_check = [
+    "codespell==2.3.0"
+]
+packaging = [
+    "build==1.2.2",
+    "twine==5.1.1"
+]
+tests = [
+    "dictdiffer==0.9.0",
+    "pytest==8.3.3",
+    "pytest-datafiles==3.0.0"
+]
+type_check = [
+    "mypy==1.13.0",
+    "networkx-stubs==0.0.1",
+    "pytest==8.3.3",
+    "types-requests==2.32.0.20241016"
+]
+
 [project.urls]
 Changelog = "https://github.com/bo4e/bo4e-python/releases"
 Homepage = "https://github.com/bo4e/bo4e-python"

requirements.txt

@@ -2,18 +2,18 @@
 # This file is autogenerated by pip-compile with Python 3.12
 # by the following command:
 #
-#    pip-compile requirements.in
+#    pip-compile pyproject.toml
 #
 annotated-types==0.5.0
     # via pydantic
 iso3166==2.1.1
-    # via -r requirements.in
+    # via -r pyproject.toml
 pydantic==2.8.2
-    # via -r requirements.in
+    # via -r pyproject.toml
 pydantic-core==2.20.1
     # via pydantic
 pyhumps==3.8.0
-    # via -r requirements.in
+    # via -r pyproject.toml
 typing-extensions==4.11.0
     # via
     #   pydantic