Add Nat Com link to documentation #197
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name: Test Coverage | |
on: | |
push: | |
branches: | |
- master | |
pull_request: | |
branches: | |
- master | |
jobs: | |
test: | |
name: Run Tests and Report Coverage | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: '3.12' | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install -r requirements.txt | |
pip install pytest pytest-cov | |
- name: Install cd-hit and mmseqs2 | |
run: | | |
sudo apt-get update | |
sudo apt-get install -y cd-hit | |
sudo apt-get install -y mmseqs2 | |
- name: Run tests with coverage and generate XML report | |
run: | | |
pytest --cov=./ --cov-report=xml | |
- name: Upload coverage to Codecov | |
uses: codecov/codecov-action@v3 | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
file: ./coverage.xml | |
fail_ci_if_error: true | |
env: | |
MPLBACKEND: Agg |