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Memory and Performance Issues with JAX solver

Status: Open.

#564 In choderalab/pymbar;

· badisa opened on Sep 1, 2025

<code>matmul</code> errors, <code>matmul</code> errors everywhere

Status: Open.

#561 In choderalab/pymbar;

· Magalame opened on Aug 5, 2025

<code>verbose = True</code> triggers a type error

Status: Open.

#560 In choderalab/pymbar;

· Magalame opened on Jul 28, 2025

Possible JAX-incompatible code path?

bug

Status: Open.

#557 In choderalab/pymbar;

· mrshirts opened on Jun 16, 2025

· 

4.1

numpy 2.3.0 madness

Status: Open.

#556 In choderalab/pymbar;

· xiki-tempula opened on Jun 14, 2025

Remove/adjust logging

Status: Open.

#554 In choderalab/pymbar;

· FlorisLoffler opened on May 12, 2025

· 

4.1

Better default behavior for failure/success of MBAR solver.

Status: Open.

#548 In choderalab/pymbar;

· mrshirts opened on Feb 26, 2025

Add bootstrap to EXP and BAR?

enhancement

Status: Open.

#546 In choderalab/pymbar;

· mrshirts opened on Dec 27, 2024

Should Subsampling be Recommended?

Status: Open.

#545 In choderalab/pymbar;

· fjclark opened on Nov 18, 2024

<code>hybr</code> solver fails, then seeds <code>adaptive</code> solver with bad starting <code>f_i</code>

Status: Open.

#544 In choderalab/pymbar;

· SimonBoothroyd opened on Nov 11, 2024

Including methods for equilibration detection

Status: Open.

#543 In choderalab/pymbar;

· ijpulidos opened on Oct 21, 2024

Switch from u_kln to u_kn in examples

Status: Open.

#542 In choderalab/pymbar;

· mrshirts opened on Sep 18, 2024