Fix table name in Query, and use TEXT instead of default JPA varchar(1000)

Author: kinow

src/main/java/org/commonwl/view/workflow/QueuedWorkflow.java

@@ -36,26 +36,26 @@ public class QueuedWorkflow extends BaseEntity implements Serializable {
     public String id;
 
     // Very barebones workflow to build loading thumbnail and overview
-    @Column(columnDefinition = "jsonb", length = 10000)
+    @Column(columnDefinition = "jsonb")
     @Type(type = "json")
     @Convert(disableConversion = true)
     private Workflow tempRepresentation;
 
     // List of packed workflows for packed workflows
     // TODO: Refactor so this is not necessary
-    @Column(columnDefinition = "jsonb", length = 10000)
+    @Column(columnDefinition = "jsonb")
     @Type(type = "json")
     @Convert(disableConversion = true)
     private List<WorkflowOverview> workflowList;
 
     // Cwltool details
-    @Column(columnDefinition = "jsonb", length = 10000)
+    @Column(columnDefinition = "jsonb")
     @Type(type = "json")
     @Convert(disableConversion = true)
     private CWLToolStatus cwltoolStatus = CWLToolStatus.RUNNING;
-    @Column(length = 1000)
+    @Column(columnDefinition = "TEXT")
     private String cwltoolVersion = "";
-    @Column(length = 1000)
+    @Column(columnDefinition = "TEXT")
     private String message;
 
     public String getId() {

src/main/java/org/commonwl/view/workflow/QueuedWorkflowRepository.java

@@ -20,7 +20,7 @@ public interface QueuedWorkflowRepository extends JpaRepository<QueuedWorkflow,
      * @param retrievedOn Date of when the queued workflow was retrieved
      * @return The number of queued workflows deleted
      */
-    @Query(value = "DELETE FROM queued_workflow q WHERE q.tempRepresentation ->> 'retrieved_on' <= ?1", nativeQuery = true)
+    @Query(value = "DELETE FROM queued_workflow q WHERE q.temp_representation ->> 'retrieved_on' <= ?1", nativeQuery = true)
     Long deleteByTempRepresentation_RetrievedOnLessThanEqual(Date retrievedOn);
 
     /**
@@ -29,7 +29,7 @@ public interface QueuedWorkflowRepository extends JpaRepository<QueuedWorkflow,
      * @param retrievedOn Details of where the queued workflow is from
      * @return A list of queued workflows
      */
-    @Query(value = "SELECT q.* FROM queued_workflow q WHERE q.tempRepresentation ->> 'retrieved_on' <= ?1", nativeQuery = true)
+    @Query(value = "SELECT q.* FROM queued_workflow q WHERE q.temp_representation ->> 'retrieved_on' <= ?1", nativeQuery = true)
     List<QueuedWorkflow> findByTempRepresentation_RetrievedOnLessThanEqual(Date retrievedOn);
 
 }

src/main/java/org/commonwl/view/workflow/Workflow.java

@@ -67,7 +67,7 @@ public class Workflow extends BaseEntity implements Serializable {
     public String id;
 
     // Metadata
-    @Column(columnDefinition = "jsonb", length = 10000)
+    @Column(columnDefinition = "jsonb")
     @Type(type = "json")
     @Convert(disableConversion = true)
     private GitDetails retrievedFrom;
@@ -77,46 +77,46 @@ public class Workflow extends BaseEntity implements Serializable {
 
     // The last commit from the branch at the time of fetching
     // Used for caching purposes
-    @Column
+    @Column(columnDefinition = "TEXT")
     private String lastCommit;
 
     // A String which represents the path to a RO bundle
     // Path types cannot be stored using Spring Data, unfortunately
-    @Column(length=1000)
+    @Column(columnDefinition = "TEXT")
     private String roBundlePath;
 
     // Contents of the workflow
-    @Column(length=1000)
+    @Column(columnDefinition = "TEXT")
     private String label;
-    @Column(length=1000)
+    @Column(columnDefinition = "TEXT")
     private String doc;
-    @Column(columnDefinition = "jsonb", length = 10000)
+    @Column(columnDefinition = "jsonb")
     @Type(type = "json")
     @Convert(disableConversion = true)
     private Map<String, CWLElement> inputs;
-    @Column(columnDefinition = "jsonb", length = 10000)
+    @Column(columnDefinition = "jsonb")
     @Type(type = "json")
     @Convert(disableConversion = true)
     private Map<String, CWLElement> outputs;
-    @Column(columnDefinition = "jsonb", length = 10000)
+    @Column(columnDefinition = "jsonb")
     @Type(type = "json")
     @Convert(disableConversion = true)
     private Map<String, CWLStep> steps;
 
     // Currently only DockerRequirement is parsed for this
-    @Column(length=1000)
+    @Column(columnDefinition = "TEXT")
     private String dockerLink;
 
-    @Column(length=1000)
+    @Column(columnDefinition = "TEXT")
     private String cwltoolVersion = "";
 
     // DOT graph of the contents
-    @Column(length=1000)
+    @Column(columnDefinition = "TEXT")
     private String visualisationDot;
 
     private static final String PERMANENT_LINK_BASE_URL = "https://w3id.org/cwl/view";
 
-    @Column(length=1000)
+    @Column(columnDefinition = "TEXT")
 	private String licenseLink;
 
     public Workflow(String label, String doc, Map<String, CWLElement> inputs, Map<String, CWLElement> outputs,