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refactor xarray dimension selection (#1134)
* refactor xarray dimension selection * refactor type and slice handling * remove slice * remove print * rename method to sel_method * update docs * more docs
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‎CHANGES.md

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### titiler.xarray
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* change `get_variable.drop_dim` parameter type from `str` to `List[str]` **breaking change**
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* update `rio-tiler` requirement to `>=7.6.1`
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* add `sel` and `sel_method` options to select dimension
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```
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# before
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https://.../0/0/0.png?url=dataset.zarr&drop_dim=time=2023-01-01
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# now
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https://.../0/0/0.png?url=dataset.zarr&sel=time=2023-01-01
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# method
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https://.../0/0/0.png?url=dataset.zarr&sel=time=2023-01-02&sel_method=nearest
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# Can use `slice` when providing 2 values
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https://.../0/0/0.png?url=dataset.zarr&sel=time=2023-01-01&time=2023-01-31
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```
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* add support for `bidx` parameter
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* remove `first` **time** dim selection **breaking change**
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* add support for 3D dataset
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* remove `drop_dim` option **breaking change**
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* remove `datetime` option **breaking change**
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* deprecate `VariablesExtension` extension
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* add `DatasetMetadataExtension` extension (`/dataset/keys`, `/dataset/` and `/dataset/dict` endpoints)
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‎docs/mkdocs.yml

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signature_crossrefs: true
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extensions:
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- griffe_inherited_docstrings
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import:
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inventories:
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- https://docs.python.org/3/objects.inv
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- https://numpy.org/doc/stable/objects.inv
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- https://rasterio.readthedocs.io/en/stable/objects.inv

‎docs/src/advanced/Extensions.md

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@@ -33,32 +33,36 @@ class FactoryExtension(metaclass=abc.ABCMeta):
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## Available extensions
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#### cogValidateExtension
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#### titiler.extensions.cogValidateExtension
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- Goal: adds a `/validate` endpoint which return the content of rio-cogeo `info` method
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- Additional requirements: `titiler.extensions["cogeo"]` (installs `rio-cogeo`)
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#### cogViewerExtension
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#### titiler.extensions.cogViewerExtension
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- Goal: adds a `/viewer` endpoint which return an HTML viewer for simple COGs
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#### stacViewerExtension
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#### titiler.extensions.stacViewerExtension
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- Goal: adds a `/viewer` endpoint which return an HTML viewer for STAC item
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#### stacExtension
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#### titiler.extensions.stacExtension
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- Goal: adds a `/stac` endpoint which return an HTML viewer for STAC item
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- Additional requirements: `titiler.extensions["stac"]` (installs `rio-stac`)
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#### wmsExtension
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#### titiler.extensions.wmsExtension
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- Goal: adds a `/wms` endpoint to support OGC WMS specification (`GetCapabilities` and `GetMap`)
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#### stacRenderExtenstion
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#### titiler.extensions.stacRenderExtenstion
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- Goal: adds `/render` and `/render/{render_id}` endpoints which return the contents of [STAC render extension](https://github.com/stac-extensions/render) and links to tileset.json and WMTS service
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#### titiler.xarray.DatasetMetadataExtension
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- Goal: adds `/dataset/`, `/dataset/keys` and `/datasets/dict` endpoints which return metadata about a multidimensional Dataset (not a DataArray)
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## How To
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### Use extensions
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app.include_router(tiler.router, prefix="/cog")
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```
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See [titiler.application](../application) for a full example.
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### Create your own
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```python

‎docs/src/advanced/dependencies.md

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Using `titiler.core.dependencies.DefaultDependency`, we can use `.as_dict(exclude_none=True/False)` method to `unpack` the object parameters. This can be useful if method or reader do not take the same parameters.
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## titiler.core
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#### AssetsParams
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Define `assets`.
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#### TileParams
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Defile `buffer` and `padding` to apply at tile creation.
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Define `buffer` and `padding` to apply at tile creation.
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| Name | Type | Required | Default
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| ------ | ----------|----------|--------------
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</details>
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## titiler.xarray
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#### XarrayIOParams
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Define Xarray's `open_args` to `xarray.open_dataset`.
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| Name | Type | Required | Default
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| ------ | ---------- |----------|--------------
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| **group** | Query (str) | No | None
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| **decode_times** | Query (bool)| No | None
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<details>
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```python
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@dataclass
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class XarrayIOParams(DefaultDependency):
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"""Dataset IO Options."""
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group: Annotated[
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Optional[str],
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Query(
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description="Select a specific zarr group from a zarr hierarchy. Could be associated with a zoom level or dataset."
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),
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] = None
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decode_times: Annotated[
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Optional[bool],
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Query(
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title="decode_times",
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description="Whether to decode times",
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),
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] = None
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```
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</details>
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#### XarrayDsParams
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Define options to select a **variable** within a Xarray Dataset.
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| Name | Type | Required | Default
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| ------ | ---------- |----------|--------------
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| **variable** | Query (str) | Yes | None
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| **sel** | Query (list of str) | No | None
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| **method** | Query (str)| No | None
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<details>
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```python
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@dataclass
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class XarrayDsParams(DefaultDependency):
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"""Xarray Dataset Options."""
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variable: Annotated[str, Query(description="Xarray Variable name.")]
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sel: Annotated[
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Optional[List[SelDimStr]],
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Query(
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description="Xarray Indexing using dimension names `{dimension}={value}`.",
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),
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] = None
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method: Annotated[
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Optional[Literal["nearest", "pad", "ffill", "backfill", "bfill"]],
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Query(
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alias="sel_method",
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description="Xarray indexing method to use for inexact matches.",
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),
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] = None
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```
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</details>
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#### XarrayParams
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Combination of `XarrayIOParams` and `XarrayDsParams`
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| Name | Type | Required | Default
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| ------ | ---------- |----------|--------------
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| **group** | Query (str) | No | None
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| **decode_times** | Query (bool)| No | None
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| **variable** | Query (str) | Yes | None
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| **sel** | Query (list of str) | No | None
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| **method** | Query (str)| No | None
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<details>
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```python
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@dataclass
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class XarrayParams(XarrayIOParams, XarrayDsParams):
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"""Xarray Reader dependency."""
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pass
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```
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</details>
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#### CompatXarrayParams
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same as `XarrayParams` but with optional `variable` option.
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| Name | Type | Required | Default
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| ------ | ---------- |----------|--------------
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| **group** | Query (str) | No | None
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| **decode_times** | Query (bool)| No | None
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| **variable** | Query (str) | No | None
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| **sel** | Query (list of str) | No | None
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| **method** | Query (str)| No | None
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<details>
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```python
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@dataclass
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class XarrayParams(XarrayIOParams, XarrayDsParams):
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"""Xarray Reader dependency."""
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pass
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```
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</details>
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#### DatasetParams
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Same as `titiler.core.dependencies.DatasetParams` but with only `nodata` and `reproject`
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| Name | Type | Required | Default
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| ------ | ----------|----------|--------------
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| **nodata** | Query (str, int, float) | No | None
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| **reproject** | Query (str) | No | 'nearest'
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<details>
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```python
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@dataclass
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class DatasetParams(DefaultDependency):
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"""Low level WarpedVRT Optional parameters."""
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nodata: Annotated[
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Optional[Union[str, int, float]],
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Query(
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title="Nodata value",
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description="Overwrite internal Nodata value",
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),
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] = None
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reproject_method: Annotated[
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Optional[WarpResampling],
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Query(
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alias="reproject",
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description="WarpKernel resampling algorithm (only used when doing re-projection). Defaults to `nearest`.",
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),
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] = None
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def __post_init__(self):
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"""Post Init."""
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if self.nodata is not None:
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self.nodata = numpy.nan if self.nodata == "nan" else float(self.nodata)
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```
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</details>
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#### DatasetParams
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Same as `titiler.core.dependencies.PartFeatureParams` but with `resampling` option
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| Name | Type | Required | Default
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| ------ | ----------|----------|--------------
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| **max_size** | Query (int) | No | None
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| **height** | Query (int) | No | None
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| **width** | Query (int) | No | None
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| **resampling** | Query (str) | No | 'nearest'
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<details>
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```python
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@dataclass
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class PartFeatureParams(DefaultDependency):
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"""Common parameters for bbox and feature."""
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max_size: Annotated[Optional[int], "Maximum image size to read onto."] = None
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height: Annotated[Optional[int], "Force output image height."] = None
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width: Annotated[Optional[int], "Force output image width."] = None
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resampling_method: Annotated[
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Optional[RIOResampling],
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Query(
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alias="resampling",
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description="RasterIO resampling algorithm. Defaults to `nearest`.",
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),
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] = None
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def __post_init__(self):
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"""Post Init."""
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if self.width and self.height:
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self.max_size = None
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```
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</details>

‎docs/src/advanced/endpoints_factories.md

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- **reader**: Dataset Reader **required**.
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- **path_dependency**: Dependency to use to define the dataset url. Defaults to `titiler.core.dependencies.DatasetPathParams`.
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- **reader_dependency**: Dependency to control options passed to the reader instance init. Defaults to `titiler.xarray.dependencies.XarrayParams`
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- **layer_dependency**: Dependency to define band indexes or expression. Defaults to `titiler.core.dependencies.DefaultDependency`.
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- **layer_dependency**: Dependency to define band indexes or expression. Defaults to `titiler.core.dependencies.BidxParams`.
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- **dataset_dependency**: Dependency to overwrite `nodata` value and change the `Warp` resamplings. Defaults to `titiler.xarray.dependencies.DatasetParams`.
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- **tile_dependency**: Dependency for tile creation options. Defaults to `titiler.core.dependencies.DefaultDependency`.
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- **stats_dependency**: Dependency to define options for *rio-tiler*'s statistics method used in `/statistics` endpoints. Defaults to `titiler.core.dependencies.StatisticsParams`.

‎docs/src/endpoints/cog.md

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- **x** (int): TMS tile's column.
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- **y** (int): TMS tile's row.
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- **scale** (int): Tile size scale, default is set to 1 (256x256). **Optional**
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- **format** (str): Output [image format](../output_format.md), default is set to None and will be either JPEG or PNG depending on masked value. **Optional**
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- **format** (str): Output [image format](../user_guide/output_format.md), default is set to None and will be either JPEG or PNG depending on masked value. **Optional**
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- PathParams:
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- **format** (str): Output [image format](../output_format.md), default is set to None and will be either JPEG or PNG depending on masked value. **Optional**
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- **format** (str): Output [image format](../user_guide/output_format.md), default is set to None and will be either JPEG or PNG depending on masked value. **Optional**
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- PathParams:
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- **minx,miny,maxx,maxy** (str): Comma (',') delimited bounding box in WGS84.
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- **format** (str): Output [image format](../output_format.md).
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- **format** (str): Output [image format](../user_guide/output_format.md).
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- **height** (int): Force output image height.
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- **width** (int): Force output image width.
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- **width** (int): Force output image width. **Optional**
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- **format** (str): Output [image format](../output_format.md), default is set to None and will be either JPEG or PNG depending on masked value. **Optional**
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- **format** (str): Output [image format](../user_guide/output_format.md), default is set to None and will be either JPEG or PNG depending on masked value. **Optional**
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- **tile_format** (str): Output [image format](../output_format.md), default is set to None and will be either JPEG or PNG depending on masked value.
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- **tile_format** (str): Output [image format](../user_guide/output_format.md), default is set to None and will be either JPEG or PNG depending on masked value.
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- **tile_scale** (int): Tile size scale, default is set to 1 (256x256).
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- **tile_format** (str): Output [image format](../output_format.md), default is set to None and will be either JPEG or PNG depending on masked value.
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- **tile_format** (str): Output [image format](../user_guide/output_format.md), default is set to None and will be either JPEG or PNG depending on masked value.
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- **tile_scale** (int): Tile size scale, default is set to 1 (256x256).
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- **minzoom** (int): Overwrite default minzoom.
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- **maxzoom** (int): Overwrite default maxzoom.

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