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I think the Challenge 2: Read in and check out new data section needs some effort to edit. The nlcd@legend has no data. Even when brought into the memory with readAll. So the predefined legend values are not available, even before transforming and cropping. So a large part of this lesson is lost. The legend data is there, somewhere, because the barplot segments into the colors and if you just click on the tif file (mac) there is a plot that follows the predefined colors.
We noted that there is a reference to a data folder: 'You have another raster dataset in your ./data directory. The file is called nlcd2011_sf.tif.'
So wondering if there was change somehow that affected the data?