Keep only parts related to late tasks

Author: Bisaloo

CONTRIBUTING.md

@@ -222,8 +222,8 @@ community listed at <https://github.com/epiverse-trace/> including via social
 media, slack, newsletters, and email lists. You can also [reach us by
 email][contact].
 
-[repo]: https://github.com/epiverse-trace/tutorials
-[repo-issues]: https://github.com/epiverse-trace/tutorials/issues
+[repo]: https://github.com/epiverse-trace/tutorials-late
+[repo-issues]: https://github.com/epiverse-trace/tutorials-late/issues
 [contact]: mailto:andree.valle-campos@lshtm.ac.uk
 [cp-site]: https://epiverse-trace.github.io/
 [dc-issues]: https://github.com/issues?q=user%3Adatacarpentry

README.Rmd

@@ -18,13 +18,13 @@ knitr::opts_chunk$set(
 [![Project Status: WIP - Initial development is in progress, but there has not yet been a stable, usable release suitable for the public.](https://www.repostatus.org/badges/latest/wip.svg)](https://www.repostatus.org/#wip)
 <!-- badges: end -->
 
-The goal of `tutorials` is to host tutorials for Outbreak analytics with R.
+The goal of this repository is to host tutorials for Scenario modelling for outbreak analytics with R.
 
 ## Usage
 
 > NOTE: The expected date for the deployment of the first set of tutorials is mid-November 2023.
 
-Visualize this content as a webpage at <https://epiverse-trace.github.io/tutorials/>
+Visualize this content as a webpage at <https://epiverse-trace.github.io/tutorials-late/>
 
 To build the website locally, please refer to [the contributing guidelines](CONTRIBUTING.md).
 
@@ -48,7 +48,3 @@ Read the [License](LICENSE.md) of this tutorial.
 
 - [@amanda-minter](https://github.com/amanda-minter/)
 - [@avallecam](https://github.com/avallecam/)
-
-```{r,eval=FALSE,echo=FALSE}
-readCitationFile(file = "inst/CITATION")
-```

config.yaml

@@ -11,13 +11,13 @@
 carpentry: 'incubator'
 
 # Overall title for pages.
-title: 'Outbreak analytics with R'
+title: 'Scenario modelling for outbreak analytics with R'
 
 # Date the lesson was created (YYYY-MM-DD, this is empty by default)
 created:
 
 # Comma-separated list of keywords for the lesson
-keywords: 'forecasts, epidemic models, interventions'
+keywords: 'epidemic models, interventions'
 
 # Life cycle stage of the lesson
 # possible values: pre-alpha, alpha, beta, stable
@@ -27,7 +27,7 @@ life_cycle: 'pre-alpha'
 license: 'CC-BY 4.0'
 
 # Link to the source repository for this lesson
-source: 'https://github.com/epiverse-trace/tutorials'
+source: 'https://github.com/epiverse-trace/tutorials-late'
 
 # Default branch of your lesson
 branch: 'main'
@@ -60,9 +60,6 @@ contact: 'andree.valle-campos@lshtm.ac.uk'
 # Order of episodes in your lesson
 episodes:
 - introduction.Rmd
-- read-delays.Rmd
-- quantify-transmissibility.Rmd
-- create-forecast.Rmd
 - simulating-transmission.Rmd
 - model-choices.Rmd
 - modelling-interventions.Rmd
@@ -84,4 +81,4 @@ profiles:
 
 varnish: epiverse-trace/varnish@epiversetheme
 # this is carpentries/sandpaper#533 in our fork so we can keep it up to date with main
-sandpaper: epiverse-trace/sandpaper@patch-renv-github-bug 
+sandpaper: epiverse-trace/sandpaper@patch-renv-github-bug