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Merged
merged 2 commits into from
Jul 24, 2025
Merged

test fix #108

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579d99b
test fix
avallecam Jul 24, 2025
eb57293
update renv
avallecam Jul 24, 2025
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2 changes: 1 addition & 1 deletion episodes/modelling-interventions.Rmd
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Original file line number Diff line number Diff line change
Expand Up @@ -321,7 +321,7 @@ The diagram below shows the SEIRV model implemented using `model_default()` wher
DiagrammeR::grViz("digraph {

# graph statement
#################
################
graph [layout = dot,
rankdir = LR,
overlap = true,
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72 changes: 30 additions & 42 deletions renv/profiles/lesson-requirements/renv.lock
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Expand Up @@ -24,8 +24,7 @@
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"Repository": "RSPM",
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"Repository": "CRAN"
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Expand Down Expand Up @@ -250,8 +249,7 @@
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Expand Down Expand Up @@ -317,8 +315,7 @@
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"Repository": "CRAN"
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Expand Down Expand Up @@ -420,8 +417,7 @@
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Expand Down Expand Up @@ -794,8 +790,7 @@
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Expand Down Expand Up @@ -904,7 +899,7 @@
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"Maintainer": "Rich FitzJohn <rich.fitzjohn@gmail.com>",
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Expand Down Expand Up @@ -1284,8 +1279,7 @@
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"Package": "desc",
Expand Down Expand Up @@ -1374,8 +1368,7 @@
"NeedsCompilation": "no",
"Author": "Steph Locke [cre], Rich FitzJohn [aut], Anne Cori [aut], Thibaut Jombart [aut]",
"Maintainer": "Steph Locke <steph@itsalocke.com>",
"Repository": "RSPM",
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"Repository": "CRAN"
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"distributional": {
"Package": "distributional",
Expand Down Expand Up @@ -1573,13 +1566,16 @@
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"Package": "epiparameter",
Expand Down Expand Up @@ -2503,8 +2499,7 @@
"NeedsCompilation": "no",
"Author": "Rich FitzJohn [aut, cre]",
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"Repository": "RSPM",
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"igraph": {
"Package": "igraph",
Expand Down Expand Up @@ -2770,8 +2765,7 @@
"stats",
"graphics"
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"Repository": "RSPM",
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"lattice": {
"Package": "lattice",
Expand Down Expand Up @@ -2810,8 +2804,7 @@
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"lifecycle": {
"Package": "lifecycle",
Expand Down Expand Up @@ -2963,10 +2956,9 @@
},
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"Version": "1.9-1",
"Version": "1.9-3",
"Source": "Repository",
"Author": "Simon Wood <simon.wood@r-project.org>",
"Maintainer": "Simon Wood <simon.wood@r-project.org>",
"Authors@R": "person(given = \"Simon\", family = \"Wood\", role = c(\"aut\", \"cre\"), email = \"simon.wood@r-project.org\")",
"Title": "Mixed GAM Computation Vehicle with Automatic Smoothness Estimation",
"Description": "Generalized additive (mixed) models, some of their extensions and other generalized ridge regression with multiple smoothing parameter estimation by (Restricted) Marginal Likelihood, Generalized Cross Validation and similar, or using iterated nested Laplace approximation for fully Bayesian inference. See Wood (2017) <doi:10.1201/9781315370279> for an overview. Includes a gam() function, a wide variety of smoothers, 'JAGS' support and distributions beyond the exponential family.",
"Priority": "recommended",
Expand All @@ -2991,6 +2983,8 @@
"ByteCompile": "yes",
"License": "GPL (>= 2)",
"NeedsCompilation": "yes",
"Author": "Simon Wood [aut, cre]",
"Maintainer": "Simon Wood <simon.wood@r-project.org>",
"Repository": "CRAN"
},
"mime": {
Expand Down Expand Up @@ -3104,8 +3098,7 @@
"Maintainer": "Paul Gilbert <pgilbert.ttv9z@ncf.ca>",
"URL": "http://optimizer.r-forge.r-project.org/",
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"Repository": "RSPM",
"Encoding": "UTF-8"
"Repository": "CRAN"
},
"oai": {
"Package": "oai",
Expand Down Expand Up @@ -3180,7 +3173,7 @@
"NeedsCompilation": "no",
"Author": "Rich FitzJohn [aut, cre], Thibaut Jombart [ctb], Imperial College of Science, Technology and Medicine [cph]",
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"Repository": "https://packagemanager.posit.co/cran/__linux__/jammy/latest"
"Repository": "CRAN"
},
"openssl": {
"Package": "openssl",
Expand Down Expand Up @@ -3853,7 +3846,7 @@
"NeedsCompilation": "yes",
"Author": "Rich FitzJohn [aut, cre], Imperial College of Science, Technology and Medicine [cph]",
"Maintainer": "Rich FitzJohn <rich.fitzjohn@gmail.com>",
"Repository": "https://packagemanager.posit.co/cran/__linux__/jammy/latest"
"Repository": "CRAN"
},
"rlang": {
"Package": "rlang",
Expand Down Expand Up @@ -4144,8 +4137,7 @@
"NeedsCompilation": "no",
"Author": "Simon Potter [aut, trl, cre], Simon Sapin [aut], Ian Bicking [aut]",
"Maintainer": "Simon Potter <simon@sjp.co.nz>",
"Repository": "RSPM",
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"Repository": "CRAN"
},
"socialmixr": {
"Package": "socialmixr",
Expand Down Expand Up @@ -4730,8 +4722,7 @@
"URL": "https://www.rforge.net/uuid",
"BugReports": "https://github.com/s-u/uuid/issues",
"NeedsCompilation": "yes",
"Repository": "RSPM",
"Encoding": "UTF-8"
"Repository": "CRAN"
},
"vctrs": {
"Package": "vctrs",
Expand Down Expand Up @@ -4850,8 +4841,7 @@
"RoxygenNote": "7.1.2",
"NeedsCompilation": "no",
"Author": "Almende B.V. and Contributors [aut, cph] (vis.js library in htmlwidgets/lib, https://visjs.org/, https://github.com/visjs/vis-network), Benoit Thieurmel [aut, cre] (R interface)",
"Repository": "RSPM",
"Encoding": "UTF-8"
"Repository": "CRAN"
},
"vroom": {
"Package": "vroom",
Expand Down Expand Up @@ -5013,8 +5003,7 @@
"License": "GPL (>= 2)",
"URL": "http://population.un.org/wpp",
"NeedsCompilation": "no",
"Repository": "RSPM",
"Encoding": "UTF-8"
"Repository": "CRAN"
},
"xfun": {
"Package": "xfun",
Expand Down Expand Up @@ -5121,8 +5110,7 @@
"URL": "https://github.com/vubiostat/r-yaml/",
"BugReports": "https://github.com/vubiostat/r-yaml/issues",
"NeedsCompilation": "yes",
"Repository": "RSPM",
"Encoding": "UTF-8"
"Repository": "CRAN"
}
}
}
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