From db0f990b0b312c8b873fb0d936808099f616e287 Mon Sep 17 00:00:00 2001 From: Hugo Gruson <10783929+Bisaloo@users.noreply.github.com> Date: Wed, 6 Nov 2024 12:04:25 +0100 Subject: [PATCH] Let sandpaper translate section headings --- episodes/compare-interventions.Rmd | 3 --- episodes/model-choices.Rmd | 8 -------- episodes/modelling-interventions.Rmd | 4 ---- episodes/simulating-transmission.Rmd | 4 ---- episodes/template.Rmd | 2 -- 5 files changed, 21 deletions(-) diff --git a/episodes/compare-interventions.Rmd b/episodes/compare-interventions.Rmd index 2bd08c21..ee4aa176 100644 --- a/episodes/compare-interventions.Rmd +++ b/episodes/compare-interventions.Rmd @@ -96,7 +96,6 @@ output_baseline <- model_default( ::::::::::::::::::::::::::::::::::::: prereq -## Prerequisites + Complete tutorials [Simulating transmission](../episodes/simulating-transmission.md) and [Modelling interventions](../episodes/modelling-interventions.md) Learners should familiarise themselves with following concept dependencies before working through this tutorial: @@ -339,8 +338,6 @@ output <- model_vacamole( ::::::::::::::::: solution -### SOLUTION - 1. Run the model ```{r} diff --git a/episodes/model-choices.Rmd b/episodes/model-choices.Rmd index c1f38562..4855302b 100644 --- a/episodes/model-choices.Rmd +++ b/episodes/model-choices.Rmd @@ -26,7 +26,6 @@ library(ggplot2) ::::::::::::::::::::::::::::::::::::: prereq -## Prerequisites + Complete tutorial [Simulating transmission](../episodes/simulating-transmission.md) ::::::::::::::::::::::::::::::::: @@ -121,8 +120,6 @@ Which of the following models would be an appropriate choice for this task: ::::::::::::::::: hint -### HINT - Consider the following questions: ::::::::::::::::::::::::::::::::::::: checklist @@ -140,9 +137,6 @@ Consider the following questions: ::::::::::::::::: solution -### SOLUTION - - + What is the infection/disease of interest? **Ebola** + Do we need a deterministic or stochastic model? **A stochastic model would allow us to explore variation in the early stages of the outbreak** + What is the outcome of interest? **Number of infections** @@ -331,8 +325,6 @@ Adapt the code from the [accounting for uncertainty](../episodes/simulating-tran ::::::::::::::::: solution -### SOLUTION - 1. Run the model once and plot the number of infectious individuals through time diff --git a/episodes/modelling-interventions.Rmd b/episodes/modelling-interventions.Rmd index 75845d31..723ab3f3 100644 --- a/episodes/modelling-interventions.Rmd +++ b/episodes/modelling-interventions.Rmd @@ -14,7 +14,6 @@ library(epidemics) - How do I investigate the effect of interventions on disease trajectories? - :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::: objectives @@ -25,7 +24,6 @@ library(epidemics) ::::::::::::::::::::::::::::::::::::: prereq -## Prerequisites + Complete tutorial on [Simulating transmission](../episodes/simulating-transmission.md). Learners should also familiarise themselves with following concept dependencies before working through this tutorial: @@ -407,8 +405,6 @@ Plot the three interventions vaccination, school closure and mask mandate and th :::::::::::::::::::::::: solution -## Output - ```{r plot_vaccinate, echo = TRUE, message = FALSE, fig.width = 10} # create intervention_type column for plotting output_vaccinate$intervention_type <- "vaccination" diff --git a/episodes/simulating-transmission.Rmd b/episodes/simulating-transmission.Rmd index 50cd072e..27bcf2ba 100644 --- a/episodes/simulating-transmission.Rmd +++ b/episodes/simulating-transmission.Rmd @@ -34,8 +34,6 @@ webshot::install_phantomjs(force = TRUE) ::::::::::::::::::::::::::::::::::::: prereq -## Prerequisites - Learners should familiarise themselves with following concept dependencies before working through this tutorial: **Mathematical Modelling** : [Introduction to infectious disease models](https://doi.org/10.1038/s41592-020-0856-2), [state variables](../learners/reference.md#state), [model parameters](../learners/reference.md#parsode), [initial conditions](../learners/reference.md#initial), [differential equations](../learners/reference.md#ordinary). @@ -275,8 +273,6 @@ contact_matrix ``` :::::::::::::::::::::::: solution - -## Output ```{r polymod_uk, echo = FALSE, message = FALSE} polymod <- socialmixr::polymod diff --git a/episodes/template.Rmd b/episodes/template.Rmd index a6d6c887..28b271a3 100644 --- a/episodes/template.Rmd +++ b/episodes/template.Rmd @@ -19,8 +19,6 @@ exercises: 5 # exercise time in minutes ::::::::::::::::::::::::::::::::::::: prereq -## Prerequisites - List (and hyperlink) the lessons/packages which need to be covered before this lesson :::::::::::::::::::::::::::::::::