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Nov 6, 2024
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Let sandpaper translate section headings #16

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3 changes: 0 additions & 3 deletions episodes/compare-interventions.Rmd
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Expand Up @@ -96,7 +96,6 @@ output_baseline <- model_default(

::::::::::::::::::::::::::::::::::::: prereq

## Prerequisites
+ Complete tutorials [Simulating transmission](../episodes/simulating-transmission.md) and [Modelling interventions](../episodes/modelling-interventions.md)

Learners should familiarise themselves with following concept dependencies before working through this tutorial:
Expand Down Expand Up @@ -339,8 +338,6 @@ output <- model_vacamole(

::::::::::::::::: solution

### SOLUTION

1. Run the model

```{r}
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8 changes: 0 additions & 8 deletions episodes/model-choices.Rmd
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Expand Up @@ -26,7 +26,6 @@ library(ggplot2)

::::::::::::::::::::::::::::::::::::: prereq

## Prerequisites
+ Complete tutorial [Simulating transmission](../episodes/simulating-transmission.md)
:::::::::::::::::::::::::::::::::

Expand Down Expand Up @@ -121,8 +120,6 @@ Which of the following models would be an appropriate choice for this task:

::::::::::::::::: hint

### HINT

Consider the following questions:

::::::::::::::::::::::::::::::::::::: checklist
Expand All @@ -140,9 +137,6 @@ Consider the following questions:

::::::::::::::::: solution

### SOLUTION


+ What is the infection/disease of interest? **Ebola**
+ Do we need a deterministic or stochastic model? **A stochastic model would allow us to explore variation in the early stages of the outbreak**
+ What is the outcome of interest? **Number of infections**
Expand Down Expand Up @@ -331,8 +325,6 @@ Adapt the code from the [accounting for uncertainty](../episodes/simulating-tran

::::::::::::::::: solution

### SOLUTION

1. Run the model once and plot the number of infectious individuals through time


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4 changes: 0 additions & 4 deletions episodes/modelling-interventions.Rmd
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Expand Up @@ -14,7 +14,6 @@ library(epidemics)

- How do I investigate the effect of interventions on disease trajectories?


::::::::::::::::::::::::::::::::::::::::::::::::

::::::::::::::::::::::::::::::::::::: objectives
Expand All @@ -25,7 +24,6 @@ library(epidemics)

::::::::::::::::::::::::::::::::::::: prereq

## Prerequisites
+ Complete tutorial on [Simulating transmission](../episodes/simulating-transmission.md).

Learners should also familiarise themselves with following concept dependencies before working through this tutorial:
Expand Down Expand Up @@ -407,8 +405,6 @@ Plot the three interventions vaccination, school closure and mask mandate and th

:::::::::::::::::::::::: solution

## Output

```{r plot_vaccinate, echo = TRUE, message = FALSE, fig.width = 10}
# create intervention_type column for plotting
output_vaccinate$intervention_type <- "vaccination"
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4 changes: 0 additions & 4 deletions episodes/simulating-transmission.Rmd
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Expand Up @@ -34,8 +34,6 @@ webshot::install_phantomjs(force = TRUE)

::::::::::::::::::::::::::::::::::::: prereq

## Prerequisites

Learners should familiarise themselves with following concept dependencies before working through this tutorial:

**Mathematical Modelling** : [Introduction to infectious disease models](https://doi.org/10.1038/s41592-020-0856-2), [state variables](../learners/reference.md#state), [model parameters](../learners/reference.md#parsode), [initial conditions](../learners/reference.md#initial), [differential equations](../learners/reference.md#ordinary).
Expand Down Expand Up @@ -275,8 +273,6 @@ contact_matrix
```

:::::::::::::::::::::::: solution

## Output

```{r polymod_uk, echo = FALSE, message = FALSE}
polymod <- socialmixr::polymod
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2 changes: 0 additions & 2 deletions episodes/template.Rmd
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Expand Up @@ -19,8 +19,6 @@ exercises: 5 # exercise time in minutes

::::::::::::::::::::::::::::::::::::: prereq

## Prerequisites

List (and hyperlink) the lessons/packages which need to be covered before this lesson

:::::::::::::::::::::::::::::::::
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