Two benchmark datasets:
| Benchmark | Dataset | Data | Updated |
|---|---|---|---|
| Westra eQTL | Westra et al. blood eQTL | 506k SNPs × 5,966 probes | Automatically via CI |
| eQTLGen | eQTLGen whole-blood cis-eQTL | ~16k traits | Manually (large dataset) |
| Metric | Direct BESD | SQLite Index |
|---|---|---|
| Query time | 100–200 ms | 10–50 ms |
| Index creation | N/A | ~2 s |
| File size | ~1.2 GB | ~400–600 MB |
| Memory | ~500 MB | ~100 MB |
See performance-westra.md for detailed results and methodology.