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Add MMSEQS2 to INTEL environment

enhancementNew feature or requestNew feature or request

Status: Open.

#187 In fatipardo/PDBCleanV2;

· fatipardo opened on Sep 12, 2025

chain ID assignment issue in scr/pdbcleanmolidcifutils.py

bugSomething isn't workingSomething isn't working

Status: Open.

#136 In fatipardo/PDBCleanV2;

· gdkwxn opened on Aug 25, 2024

Notebook 2.1 Menu Options

Status: Open.

#98 In fatipardo/PDBCleanV2;

· Liv-Weiner opened on Jul 18, 2024

cleanutils simplify step fails when structure hasn't been published

bugSomething isn't workingSomething isn't working

Status: Open.

#86 In fatipardo/PDBCleanV2;

· fatipardo opened on Aug 17, 2023

Step 2 Tutorial TSV

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#80 In fatipardo/PDBCleanV2;

· Liv-Weiner opened on Jun 22, 2023

2.2 Notebook

bugSomething isn't workingSomething isn't working

Status: Open.

#68 In fatipardo/PDBCleanV2;

· Liv-Weiner opened on Apr 14, 2023

Update Step2.2.AssignMolIDToEntitiesFoindInCIFfiles2.ipynb for new code version

bugSomething isn't workingSomething isn't working

Status: Open.

#66 In fatipardo/PDBCleanV2;

· fatipardo opened on Apr 6, 2023

Running Step 4

bugSomething isn't workingSomething isn't working

Status: Open.

#65 In fatipardo/PDBCleanV2;

· Liv-Weiner opened on Apr 1, 2023

ChainStandardization.txt Header

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#64 In fatipardo/PDBCleanV2;

· Liv-Weiner opened on Mar 24, 2023

Notebook 0 Projdir Naming

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#61 In fatipardo/PDBCleanV2;

· Liv-Weiner opened on Feb 28, 2023

Improve MolID menus

enhancementNew feature or requestNew feature or request

Status: Open.

#60 In fatipardo/PDBCleanV2;

· fatipardo opened on Feb 27, 2023

Make another set of notebooks for Ribosome

enhancementNew feature or requestNew feature or request

Status: Open.

#43 In fatipardo/PDBCleanV2;

· Liv-Weiner opened on Nov 3, 2022