2.2 Notebook

[Liv-Weiner]

In notebook 2.2 when I run the concatenation call:
! echo "2\n5\nA\nD\nD,D\nC,C\nA,B\nD\nD,D\n7\n6B\7" | PDBClean_MolID_CIF.py $PROJDIR/simple_bank_sub2 $PROJDIR/standard_MolID_bank2

Option Number: Traceback (most recent call last):
File "/Users/liv/opt/anaconda3/envs/PDBCleanV2/bin/PDBClean_MolID_CIF.py", line 4, in
import('pkg_resources').run_script('PDBClean==0.0.2', 'PDBClean_MolID_CIF.py')
File "/Users/liv/opt/anaconda3/envs/PDBCleanV2/lib/python3.10/site-packages/pkg_resources/init.py", line 672, in run_script
self.require(requires)[0].run_script(script_name, ns)
File "/Users/liv/opt/anaconda3/envs/PDBCleanV2/lib/python3.10/site-packages/pkg_resources/init.py", line 1472, in run_script
exec(code, namespace, namespace)
File "/Users/liv/opt/anaconda3/envs/PDBCleanV2/lib/python3.10/site-packages/PDBClean-0.0.2-py3.10.egg/EGG-INFO/scripts/PDBClean_MolID_CIF.py", line 67, in
input_menu = input('Option Number: ')
EOFError: EOF when reading a line

Changes in TIM (now there are two glycerol for unassigned conversions)

1:TRIOSEPHOSPHATE ISOMERASE SYNONYM TRIOSE-PHOSPHATE ISOMERASE, TIM:
1:SN-GLYCEROL-3-PHOSPHATE:
1:SN-GLYCEROL-1-PHOSPHATE:
2:GLYCEROL:
2:WATER:
2:TRIOSEPHOSPHATE ISOMERASE:
1:PHOSPHATE ION:
2:2-PHOSPHOGLYCOLIC ACID: