Skip to content

Error reading SBML model: Missing Layout Namespace #2

@EuniceBabs

Description

@EuniceBabs

Dear Developers,
Thank you for the good work,
I am trying to convert a sbml L3V1 file to a cell designer file. So I could view this file using cell designer

I used the code

java -jar layoutconverter-1.0.0-jar-with-dependencies.jar -l finalModel3.xml CDfinalModel3.xml

but I got the error below:

15:42:58 [main] ERROR org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin - Skipped invalid chemical formula: C3H4O7P
15:42:59 [main] ERROR org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin - Skipped invalid chemical formula: C10H8NO4
15:42:59 [main] ERROR org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin - Skipped invalid chemical formula: C9H13N3O5
15:42:59 [main] ERROR org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin - Skipped invalid chemical formula: NO
15:42:59 [main] ERROR org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin - Skipped invalid chemical formula: (C6H10O5)n.C9H9NO2
15:42:59 [main] ERROR org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin - Skipped invalid chemical formula: (C6H10O5)n
15:42:59 [main] ERROR org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin - Skipped invalid chemical formula: C9H12O4(C5H8)n
15:42:59 [main] ERROR org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin - Skipped invalid chemical formula: C9H10O4(C5H8)n
15:42:59 [main] ERROR org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin - Skipped invalid chemical formula: NO

Could you please help me out with this

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions