Minor formatting updates for readability#1

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mckellardw wants to merge 3 commits intogersteinlab:mainfrom

mckellardw:main

Commits on Jun 24, 2025

Add formatting to READMEs and docstrings to all of the python functions (done with Claude Sonnet 4 via copilot agent); black formatting of python scripts
mckellardw
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Commits on Jun 30, 2025