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1948 | 1948 | buttons:
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1949 | 1949 | - type: preprint
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1950 | 1950 | link: https://arxiv.org/abs/2104.11364
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| 1951 | +- id: doi:10.48550/arxiv.2109.08633 |
| 1952 | + title: An Open-Publishing Response to the COVID-19 Infodemic |
| 1953 | + authors: |
| 1954 | + - Halie M. Rando |
| 1955 | + - Simina M. Boca |
| 1956 | + - Lucy D'Agostino McGowan |
| 1957 | + - Daniel S. Himmelstein |
| 1958 | + - Michael P. Robson |
| 1959 | + - Vincent Rubinetti |
| 1960 | + - Ryan Velazquez |
| 1961 | + - COVID-19 Review Consortium |
| 1962 | + - Casey S. Greene |
| 1963 | + - Anthony Gitter |
| 1964 | + publisher: arXiv |
| 1965 | + date: '2021-01-01' |
| 1966 | + link: https://doi.org/gt6s6s |
| 1967 | + orcid: 0000-0001-8713-9213 |
| 1968 | + member: casey-greene |
| 1969 | + plugin: orcid.py |
| 1970 | + file: orcid.yaml |
1951 | 1971 | - id: doi:10.1016/j.cels.2021.07.007
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1952 | 1972 | title: Analysis of scientific society honors reveals disparities
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1953 | 1973 | authors:
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|
4473 | 4493 | - open science
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4474 | 4494 | - collaboration
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4475 | 4495 | repo: greenelab/meta-review
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| 4496 | +- id: issn:23356936 23356928 |
| 4497 | + title: '' |
| 4498 | + authors: [] |
| 4499 | + publisher: '' |
| 4500 | + date: '' |
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| 4503 | + member: casey-greene |
| 4504 | + plugin: orcid.py |
| 4505 | + file: orcid.yaml |
| 4506 | +- id: doi:10.1101/385534 |
| 4507 | + title: Parameter tuning is a key part of dimensionality reduction via deep variational |
| 4508 | + autoencoders for single cell RNA transcriptomics |
| 4509 | + authors: |
| 4510 | + - Qiwen Hu |
| 4511 | + - Casey S. Greene |
| 4512 | + publisher: Cold Spring Harbor Laboratory |
| 4513 | + date: '2018-08-05' |
| 4514 | + link: https://doi.org/gdxxjf |
| 4515 | + orcid: 0000-0001-8713-9213 |
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4476 | 4519 | - id: doi:10.1101/573782
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4477 | 4520 | title: Sequential compression of gene expression across dimensionalities and methods
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4478 | 4521 | reveals no single best method or dimensionality
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8215 | 8258 | member: casey-greene
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8216 | 8259 | plugin: sources.py
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8217 | 8260 | file: sources.yaml
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| 8262 | + title: Web of Science |
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| 8264 | + publisher: '' |
| 8265 | + date: '' |
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| 8269 | + plugin: orcid.py |
| 8270 | + file: orcid.yaml |
8218 | 8271 | - id: doi:10.7717/peerj.1621
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8219 | 8272 | title: Cross-platform normalization of microarray and RNA-seq data for machine learning
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8220 | 8273 | applications
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8356 | 8409 | buttons:
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8357 | 8410 | - type: source
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8358 | 8411 | link: https://github.com/greenelab/adni-netwas
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| 8412 | +- id: doi:10.1126/scitranslmed.aaf9196 |
| 8413 | + title: Nothing but a hound dog |
| 8414 | + authors: |
| 8415 | + - Casey S. Greene |
| 8416 | + publisher: Science Translational Medicine |
| 8417 | + date: '2016-05-25' |
| 8418 | + link: https://doi.org/gg7qr2 |
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| 8420 | + member: casey-greene |
| 8421 | + plugin: sources.py |
| 8422 | + file: sources.yaml |
8359 | 8423 | - id: doi:10.1093/bib/bbv087
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8360 | 8424 | title: Recent Advances and Emerging Applications in Text and Data Mining for Biomedical
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8361 | 8425 | Discovery
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9016 | 9080 | text: Raw networks
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9017 | 9081 | - type: app
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9018 | 9082 | link: http://giant.princeton.edu/
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| 9083 | +- title: Unsupervised feature construction and knowledge extraction from genome-wide |
| 9084 | + assays of breast cancer with denoising autoencoders |
| 9085 | + publisher: 20th Pacific Symposium on Biocomputing, PSB 2015 |
| 9086 | + date: '2024-08-07' |
| 9087 | + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-84971231452&partnerID=MN8TOARS |
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9019 | 9092 | - id: wosuid:MEDLINE:25592575
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9020 | 9093 | title: Web of Science
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9021 | 9094 | authors: []
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9026 | 9099 | member: casey-greene
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9027 | 9100 | plugin: orcid.py
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9028 | 9101 | file: orcid.yaml
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| 9102 | +- title: Applications of bioinformatics to non-coding RNAs in the era of next-generation |
| 9103 | + sequencing |
| 9104 | + publisher: 19th Pacific Symposium on Biocomputing, PSB 2014 |
| 9105 | + date: '2024-08-07' |
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9031 | 9113 | authors: []
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9155 | 9237 | member: casey-greene
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9156 | 9238 | plugin: orcid.py
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9157 | 9239 | file: orcid.yaml
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| 9240 | +- id: issn:23356936 |
| 9241 | + title: ISSN 2335-6936 (Online) | Pacific symposium on biocomputing ... | The ISSN |
| 9242 | + Portal |
| 9243 | + authors: [] |
| 9244 | + publisher: '' |
| 9245 | + date: '' |
| 9246 | + link: https://portal.issn.org/resource/ISSN/23356936 |
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9158 | 9251 | - id: doi:10.1007/978-3-642-37189-9_2
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9159 | 9252 | title: Time-Point Specific Weighting Improves Coexpression Networks from Time-Course
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9160 | 9253 | Experiments
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9298 | 9391 | member: casey-greene
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9299 | 9392 | plugin: orcid.py
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9300 | 9393 | file: orcid.yaml
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| 9394 | +- id: wosuid:WOS:000411479100034 |
| 9395 | + title: Web of Science |
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| 9397 | + publisher: '' |
| 9398 | + date: '' |
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| 9403 | + file: orcid.yaml |
9301 | 9404 | - id: wosuid:MEDLINE:19908385
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9302 | 9405 | title: Web of Science
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9303 | 9406 | authors: []
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9574 | 9677 | member: casey-greene
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9575 | 9678 | plugin: orcid.py
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9576 | 9679 | file: orcid.yaml
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| 9680 | +- title: Using expert knowledge in initialization for genome-wide analysis of epistasis |
| 9681 | + using genetic programming |
| 9682 | + publisher: 'GECCO''08: Proceedings of the 10th Annual Conference on Genetic and |
| 9683 | + Evolutionary Computation 2008' |
| 9684 | + date: '2024-08-07' |
| 9685 | + link: http://www.scopus.com/inward/record.url?eid=2-s2.0-57349142365&partnerID=MN8TOARS |
| 9686 | + orcid: 0000-0001-8713-9213 |
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9577 | 9690 | - id: doi:10.1007/978-3-540-75286-8_4
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9578 | 9691 | title: An Expert Knowledge-Guided Mutation Operator for Genome-Wide Genetic Analysis
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9579 | 9692 | Using Genetic Programming
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11382 | 11495 | link: http://dx.doi.org/10.1101/062695
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11383 | 11496 | plugin: sources.py
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11384 | 11497 | file: sources.yaml
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11385 |
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11386 |
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11387 |
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11388 |
| - - Casey S. Greene |
11389 |
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11390 |
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11391 |
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11392 |
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11393 |
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11394 | 11498 | - id: doi:10.1534/g3.116.033514
|
11395 | 11499 | title: Comprehensive Cross-Population Analysis of High-Grade Serous Ovarian Cancer
|
11396 | 11500 | Supports No More Than Three Subtypes
|
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