Docker images release job #217
Workflow file for this run
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| name: ci | ||
| on: | ||
| push: | ||
| tags: | ||
| - v* | ||
| pull_request: | ||
| branches: [main] | ||
| jobs: | ||
| pre-commit: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - uses: actions/setup-python@v3 | ||
| - uses: pre-commit/action@v3.0.1 | ||
| tests: | ||
| needs: [pre-commit] | ||
| name: "pytest and snakemake" | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| python-version: ["3.10", "3.11", "3.12"] | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up the environment | ||
| uses: ./.github/actions/setup-python-env | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| - name: Install extra dependencies | ||
| run: uv sync --extra cellpose --extra wsi --dev && uv run pip install snakemake 'pulp<2.8' | ||
| - name: Tests | ||
| run: uv run pytest | ||
| - name: Snakemake | ||
| run: cd workflow && uv run snakemake --config sdata_path=tuto.zarr --configfile=config/toy/cellpose.yaml --workflow-profile profile/ci -c1 | ||
| deploy-docs: | ||
| needs: [tests] | ||
| if: contains(github.ref, 'tags') | ||
| name: "Deploy documentation" | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up the environment | ||
| uses: ./.github/actions/setup-python-env | ||
| - name: Install extra dependencies | ||
| run: uv sync --dev | ||
| - name: Build documentation | ||
| run: uv run mkdocs gh-deploy --force | ||
| pypi-release: | ||
| needs: [tests] | ||
| if: contains(github.ref, 'tags') | ||
| name: "PyPI release" | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up the environment | ||
| uses: ./.github/actions/setup-python-env | ||
| - name: Build | ||
| run: uv build | ||
| - name: Publish | ||
| run: uv publish -t ${{ secrets.PYPI_TOKEN }} | ||
| docker-images-release: | ||
| needs: [tests] | ||
| if: contains(github.ref, 'tags') | ||
| name: "Docker images release" | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| extra-name: ["", "baysor", "cellpose", "proseg", "stardist"] | ||
| env: | ||
| EXTRA_NAME_SUFFIX: ${{ matrix.extra-name == "" && "" || format('-{0}', matrix.extra-name) }} | ||
|
Check failure on line 89 in .github/workflows/ci.yml
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||
| steps: | ||
| - name: Login to Docker Hub | ||
| uses: docker/login-action@v3 | ||
| with: | ||
| username: ${{ vars.DOCKERHUB_USERNAME }} | ||
| password: ${{ secrets.DOCKERHUB_TOKEN }} | ||
| - name: Set up Docker Buildx | ||
| uses: docker/setup-buildx-action@v3 | ||
| - name: Build and push | ||
| uses: docker/build-push-action@v6 | ||
| with: | ||
| push: true | ||
| platform: linux/amd64,linux/arm64 | ||
| tags: ${{ vars.DOCKERHUB_USERNAME }}/sopa:${{ github.ref_name }}${{ env.EXTRA_NAME_SUFFIX }} | ||
| context: docker/sopa${{ env.EXTRA_NAME_SUFFIX }} | ||
