post-preprint release

Author: quentinblampey

README.md

@@ -94,4 +94,18 @@ import sopa
 For a full description of the API, please refer to the [documentation](https://gustaveroussy.github.io/sopa).
 
 # Cite us
-Our article is not published yet. In the meantime, you can cite our **preprint**: [TODO - coming soon]
+Our article is not published yet. In the meantime, you can cite our [preprint](https://www.biorxiv.org/content/10.1101/2023.12.22.571863v1):
+
+```txt
+@article {Blampey2023.12.22.571863,
+	author = {Quentin Blampey & Kevin Mulder et al.},
+	title = {Sopa: a technology-invariant pipeline for analyses of image-based spatial-omics},
+	elocation-id = {2023.12.22.571863},
+	year = {2023},
+	doi = {10.1101/2023.12.22.571863},
+	publisher = {Cold Spring Harbor Laboratory},
+	URL = {https://www.biorxiv.org/content/early/2023/12/23/2023.12.22.571863},
+	eprint = {https://www.biorxiv.org/content/early/2023/12/23/2023.12.22.571863.full.pdf},
+	journal = {bioRxiv}
+}
+```

docs/cite_us.md

@@ -1,6 +1,17 @@
-Our paper is available as an Arxiv preprint [here](TODO).
+Our article is not published yet. In the meantime, you can cite our [preprint](https://www.biorxiv.org/content/10.1101/2023.12.22.571863v1):
+
 ```txt
-TODO
+@article {Blampey2023.12.22.571863,
+	author = {Quentin Blampey & Kevin Mulder et al.},
+	title = {Sopa: a technology-invariant pipeline for analyses of image-based spatial-omics},
+	elocation-id = {2023.12.22.571863},
+	year = {2023},
+	doi = {10.1101/2023.12.22.571863},
+	publisher = {Cold Spring Harbor Laboratory},
+	URL = {https://www.biorxiv.org/content/early/2023/12/23/2023.12.22.571863},
+	eprint = {https://www.biorxiv.org/content/early/2023/12/23/2023.12.22.571863.full.pdf},
+	journal = {bioRxiv}
+}
 ```
 
 This library has been developed by Quentin Blampey, PhD student in Biomathematics / Deep Learning. The following institutions funded this work:

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "sopa"
-version = "0.2.1"
+version = "1.0.0"
 description = "Spatial-omics pipeline and analysis"
 documentation = "https://gustaveroussy.github.io/sopa"
 homepage = "https://gustaveroussy.github.io/sopa"