From 5eef6070028c712f840662de97d85e81834c3ec0 Mon Sep 17 00:00:00 2001 From: Laurent Guerard Date: Mon, 19 May 2025 16:11:35 +0200 Subject: [PATCH] Fix snakemake aggregate call --- workflow/config/merscope/cellpose.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflow/config/merscope/cellpose.yaml b/workflow/config/merscope/cellpose.yaml index 7fc74fa3..6b5976c0 100644 --- a/workflow/config/merscope/cellpose.yaml +++ b/workflow/config/merscope/cellpose.yaml @@ -18,7 +18,7 @@ segmentation: aggregate: aggregate_channels: true - gene_column: "gene" + aggregate_genes: true min_transcripts: 10 # [optional] cells whose transcript count is below that this threshold are filtered # Comment this out if you want to use tangram -->