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Fix snakemake aggregate call #263

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Fix snakemake aggregate call #263

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2 changes: 1 addition & 1 deletion workflow/config/merscope/cellpose.yaml
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Expand Up @@ -18,7 +18,7 @@ segmentation:

aggregate:
aggregate_channels: true
gene_column: "gene"
aggregate_genes: true
min_transcripts: 10 # [optional] cells whose transcript count is below that this threshold are filtered

# Comment this out if you want to use tangram -->
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