v1.0.3

[1.0.3] - 2024-02-12

Breaking changes

• pixelsize argument has been renamed to pixel_size (the snakemake pipeline is only deprecating it for now)

Added

• The phenocycler reader can now also read .tif files (not just .qptiff)
• Added missing legend in the HTML report under the "Channels" section (#15)
• The cell area is also stored in the table (in .obs["area"])

Changed

• The uniform toy dataset now has two coordinate systems (better test case)
• Faster table conversion to the Xenium Explorer

Fixed

• Tight patching more stable with epsilon constant