v2.0.1

[2.0.1] - 2025-02-10

Fixed

• Safer check dataframe series is of integer dtype (#179)
• Ensure feature_key is converted correctly to a string (#185)
• Fixed the WSI readers @stergioc (#192)
• Fixed points_key usage in sopa.aggregate (#194)

Added

• Aggregation and segmentation now exclude non-interesting gene names (e.g., "blank", "unassigned", ...) (#144)
• Can filter low-quality transcript for transcript-based segmentation (#79)
• Possibility to choose the table name for the report (#183)
• Possibility to choose the table name for sopa.io.explorer.write (#183)
• Can set all spatialdata_io.xenium arguments in sopa.io.xenium
• CLI for stardist @jeffquinn-msk (#189)
• Baysor logs if running on one patch, and return the right error code in CLI @jeffquinn-msk (#199)
• Baysor parallelization per patch @Marius1311 (#203)

Changed

• sopa.io.write_report is copying the adata to avoid modifying it (#196)