v2.0.3

[2.0.3] - 2025-03-13

Added

• Experimental support of proseg @lguerard (#223) - tutorial coming soon
• Use symlink to Xenium output morphology/transcripts files to avoid duplicating data (#221)
• Run module load baysor in Snakemake pipeline if the module is available.

Fixed

• Use sdata.path.resolve() to compute the cache dir (more robust to execution path change)

Changed

• Using density_prior = "uniform" by default for Tangram (#174)
• spatialdata_plot is now a default dependency of Sopa
• Use prob_thresh=0.2 and nms_thresh=0.6 by default in stardist
• During segmentation, pixels outside of the ROI / tissue use the mean channels value instead of 0 (#222)