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Fix hdmf-zarr workflow (#1222)
* Fix hdmf-zarr workflow * Update CHANGELOG.md
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.github/workflows/run_hdmf_zarr_tests.yml

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@@ -21,18 +21,17 @@ jobs:
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- name: Set up Python
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uses: actions/setup-python@v5
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with:
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python-version: '3.10' # use 3.10 until hdmf-zarr updates versioneer.py which breaks on newer python
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python-version: '3.13'
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- name: Update pip
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run: python -m pip install --upgrade pip
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- name: Clone HDMF-Zarr and install dev branch of HDMF
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run: |
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python -m pip list
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git clone https://github.com/hdmf-dev/hdmf-zarr.git --recurse-submodules
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git clone https://github.com/hdmf-dev/hdmf-zarr.git
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cd hdmf-zarr
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python -m pip install -r requirements-dev.txt # do not install the pinned install requirements
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python -m pip install . # this will install a different version of hdmf from the current one
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python -m pip install .[test] # this will install a different version of hdmf from the current one
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cd ..
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python -m pip uninstall -y hdmf # uninstall the other version of hdmf
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python -m pip install . # reinstall current branch of hdmf
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- name: Run HDMF-Zarr tests on HDMF-Zarr dev branch
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run: |
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cd hdmf-zarr
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pytest
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pytest -v

CHANGELOG.md

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- Added support for expandable datasets of references for untyped and compound data types. @stephprince [#1188](https://github.com/hdmf-dev/hdmf/pull/1188)
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- Improved html representation of data in `Container` objects. @h-mayorquin [#1100](https://github.com/hdmf-dev/hdmf/pull/1100)
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- Added error when using colon for `Container` name. A colon cannot be used as a group name when writing to Zarr on Windows. @stephprince [#1202](https://github.com/hdmf-dev/hdmf/pull/1202)
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- Adjusted testing for hdmf-zarr. @rly [#1222](https://github.com/hdmf-dev/hdmf/pull/1222)
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### Bug fixes
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- Fixed inaccurate error message when validating reference data types. @stephprince [#1199](https://github.com/hdmf-dev/hdmf/pull/1199)

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